| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 12011 | 82 (0.980) | 3 (0.040) | 3/236 | NT | 3.7% | intergenic (+174/+49) | USA300HOU_pUSA300HOUMR0014/USA300HOU_pUSA300HOUMR0015 | recombinase/hypothetical protein |
| ? | CP000731 | = 12017 | 82 (1.080) | intergenic (+180/+43) | USA300HOU_pUSA300HOUMR0014/USA300HOU_pUSA300HOUMR0015 | recombinase/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATGAATCTACTAAATAATTTTATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/11860‑12011‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaagcgtacGAATTTGTACGCTTTTTTCTTGTGTTATTATTAAAATCTCATAACAGGAAAATATTATGAGATTTTAGACGCTGTCAGAACGTCTCTTTTACATCGAGTGACATTGAATCAAAGTCTTTGTATGTTAATGATATATAAA < CP000731/12017‑11879 AATGAACCTACTAAATAATTTCATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGA < 1:28438/141‑1 TCTACTAAATAATTTTATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAG > 2:84197/1‑141 TACTAAATAATTTTATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCG > 2:274639/1‑141 TACTAAATAATTTTATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCG > 1:310969/1‑141 TACTAAATAATTTGATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGATATTTTAATAATAACACAAGAAAAAAGCG < 2:367825/141‑1 ACTAAATAATTTTATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGT > 1:94385/1‑141 TAAATAATTTTATATATCATTAACATAAAAAGAATTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTAC < 2:225903/141‑1 TAAACAATTTGATTTATCATTACCATCCTGATACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTAC < 1:202498/141‑1 ATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTTTTGTGTTATTATTAAAATCTCATAACAGGAAAATATTATGAGATTTTATACGCTGTCAGAACGTCTCTTTTAa > 1:276887/1‑140 CCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTCTTGTGTTATTATTAAAATCTCATAACAGGAAAATATTATGAGATTTTAGACGCTGTCAGAACGTCTCTTTTACATCGAGT > 1:42620/1‑141 AACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTCTTGTGTTATTATTAAAATCTCATAACAGGAAAATATTATGAGATTTTAGACGCTGTCAGAACGTCTCTTTTACATCGAGTGACATTGAATCAAAGTCTTTGT < 2:42620/141‑1 AAAAGCGTACGAATTTGTACGCTTTTTTCTTGTGTTATTATTAAAATCTCATAACAGGAAAATATTATGAGATTTTAGACGCTGTCAGAACGTCTCTTTTACATCGAGTGACATTGAATCAAAGTCTTTGTATGTTAATGA > 2:268015/1‑141 AGCGTACGAATTTGTACGCTTTTTTCTTGTGTTCCTATCCAAATCTCATAACAGGAAAATATTATGAGATTTTAGACGCTGTCAGAACGTCTCTTTTACATCGAGTGACATTGAATCAAAGTCTTTGTATGTTAATGATAT < 1:108511/141‑1 AGCGTACGAATTTGTACGCTTTTTTCTTGTGTTATTATTAAAATCTCATAACAGGAAAATATTATGAGATTTTAGACGCTGTCAGAACGTCTCTTTTACATCGAGTGACATTGAATCAAAGTCTTTGTATGTTAATGATAT > 1:62648/1‑141 AGCGTACGAATTTGTACGCTTTTTTCTTGTGTTATTATTAAAATCTCATAACAGGAAAATATTATGAGATTTTAGACGCTGTCAGAACGTATCTTTTACATCGCGTGTCATGGAATCAAACTCTTTGTATGTTAATGATct > 2:393035/1‑139 GCGTACGAATTTGTACGCTTTTTTCTTGTGTTATTATTAAAATCTCATAACAGGAAAATATTATGAGATTTTAGACGCTGTCAGAACGTCTCTTTTACATCGAGTGACATTGAATCAAAGTCTTTGTATGTTAATGATATA < 1:6165/141‑1 GCGTACGAATTTGTACGCTTTTTTCTTGTGATATTATTAAAATCTCATAACAGGAAAATATTATGAGATTTTAGACGCTGTCAGAACGTCTCTTTTACATCGAGTGACATTGAATCAAAGTCTTTGTATGTTAATGATATA > 1:220081/1‑141 GCGTACGAATTTGTACGCTTTTTTCTTGAGTTATTATTAAAATCTCATAAGAGGAAAATATTATGAGATTTTAGACGCTGTCAGAACGTCTCTTTTACATAGAGTGACATTCAATCAAAGTCTTTGTATGTTAATGATAga > 2:92264/1‑139 CGTACGAATTTGTACGCTTTTTTCTTGTGTTATTATTAAAATCTCATAACAGGAAAATATTATGAGATTTTAGACGCTGTCAGAACGTCTCTTTTACATCGAGTGACATTGAATCAAAGTCTTTGTATGTTAATGATATAT < 1:223482/141‑1 GTACGAATTTGTACGCTTTTTTCTTGTGTTATTATTAAAATCTCATAACAGGAAAATATTATGAGATTTTAGACGATGTCAGAACGTCTCTTTTACATCGAGTGACATTGAATCAAAGTCTTTGTAGGTTAATGATATATt > 1:69082/1‑140 gACGAATGTGTATGGTTTTTTCTGGTGTTATTATTAAAATCTGATAACAGGAAAATATTATGAGATTTTAGACGCTGGCAGAACGGCTCTTTTACATCGAGTGACATTGAATCAAAGTCTTTGTATGTTAATGATATATAA < 2:26702/140‑1 ACGAATTTGTACGCTTTTTTCTTGTGTTATTATTAAAATCTCATAACAGGAAAATATTATGAGATTTTAGACGCTGTCAGAACGTCTCTTTTACATCGAGTGACATTGAATCAAAGTCTTTGTATGTTAATGATATATAAA < 1:66581/141‑1 ACGAATTTGTACGCTGTTTTCTTGTGTTATTATTAAAATCTCATAACAGGAAAATATTATGAGATTTTAGACGCTGTCAGAACGTCTCTTTTACATCGAGTGACATTGAATCAAAGTCTTTGTATGTTAATGATATATAAA < 2:111129/141‑1 AATGAATCTACTAAATAATTTTATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/11860‑12011‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaagcgtacGAATTTGTACGCTTTTTTCTTGTGTTATTATTAAAATCTCATAACAGGAAAATATTATGAGATTTTAGACGCTGTCAGAACGTCTCTTTTACATCGAGTGACATTGAATCAAAGTCTTTGTATGTTAATGATATATAAA < CP000731/12017‑11879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |