BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 4419	88 (1.050)	3 (0.010)	3/244	NT	0.92%	intergenic (+384/‑81)	USA300HOU_pUSA300HOUMR0006/cadR	hypothetical protein/cadmium binding protein
*	?	NC_012417	= 1946	566 (1.100)	3 (0.010)	3/244	NT	0.92%	intergenic (+179/+147)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 642 total aligned reads displayed.

TTCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAA  >  NC_012417/1806‑2082

 ttataatgtttttTTATTCCTATTGTTGTTGTTGCTTACTTTTTGTTTTTCTATAATGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAt                                                                                                                                         >  2:335288‑M2/7‑140 (MQ=255)

  cacaCTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAACATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtt                                                                                                                                        >  1:201419‑M2/1‑139 (MQ=255)

   agtatttttttttATTCCTATTGTTGGTGATACTTACTTTTTGTTTTTCTATAAAGATAAT‑TAGTTCGCCAATCTGTAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAttt                                                                                                                                       <  2:298744/135‑1 (MQ=255)

   acacTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCTAGAAAAttt                                                                                                                                       <  2:63908‑M2/141‑4 (MQ=255)

       tGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAATATGAT‑GCTTTTGACGAGATGGTAGTAATATATGATTATTATGAATATAATAAAATATATACGACTCATTTATGCTTAGTAAAtttattt                                                                                                                                   <  2:14594‑M2/141‑8 (MQ=255)

       tGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGTCGAGATGGATGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtttattt                                                                                                                                   <  2:295742‑M2/141‑8 (MQ=255)

        gTTTTTTTATTCCTTTTGGTGTTTGTTCTTAGTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtttattga                                                                                                                                  >  2:238320‑M2/1‑133 (MQ=255)

           tttttATTTCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGt                                                                                                                               <  2:111847/141‑1 (MQ=255)

           tttttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTGTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGt                                                                                                                               <  1:12302/141‑1 (MQ=255)

             tttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTg                                                                                                                             >  1:10321/1‑141 (MQ=255)

              ttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAACAAATATTATACTACGCATTTATGCCGAGAAAATTTATTGATGTTga                                                                                                                            >  1:168812/1‑141 (MQ=255)

                  ttcTATTGGTGTTTTTACTTATTTTGTTTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                        <  2:190436/139‑1 (MQ=39)

                  tCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                        <  1:136933/141‑1 (MQ=255)

                  tCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                        <  1:185684/141‑1 (MQ=255)

                  tCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                        <  1:276795/141‑1 (MQ=255)

                  tCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAG‑TAATAAGATTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                        <  2:177836/141‑1 (MQ=38)

                  tCCTATTGGTGTATTTACTTACTTTTTGTTTGTCGATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                        <  1:88546/141‑1 (MQ=39)

                       ttGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGCTGAT‑GCTTTTGGCGAGCTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAGccc                                                                                                                   >  1:343621/1‑141 (MQ=255)

                       ttGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAAccc                                                                                                                   <  1:68011/141‑1 (MQ=255)

                          gtgtTGTTGCTTAGTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTa                                                                                                                <  2:166379/141‑1 (MQ=255)

                          gtgtTGTTGCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATAGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTa                                                                                                                <  2:329521/141‑1 (MQ=255)

                               gttgCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                           <  1:180978/141‑1 (MQ=255)

                               gttgCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTGGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                           >  1:240835/1‑141 (MQ=255)

                                  gCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAAAAGAACCCTTAACTAAACt                                                                                                        >  2:376464/1‑141 (MQ=255)

                                   cTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACtt                                                                                                       >  1:159502/1‑141 (MQ=255)

                                      aCTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCa                                                                                                    >  1:217608/1‑141 (MQ=255)

                                      aCTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCa                                                                                                    <  2:55541/141‑1 (MQ=255)

                                         ttttGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTgaacac                                                                                                 >  2:254958/1‑136 (MQ=255)

                                            tGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGTTTATTATGAAGATAATAAAAAATAGACGACACATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTACAATCGaa                                                                                              >  2:286068/1‑141 (MQ=37)

                                            tGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGaa                                                                                              >  1:282616/1‑141 (MQ=255)

                                             gtattgcTATAAAGATGAT‑GGTTTTGAAGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAt                                                                                             <  1:154796/135‑1 (MQ=255)

                                                 ttCTATAAAGATGAT‑GCTTTTGACGAGCTTGAGTAATTTTATGATTATCATTAAGATAATAAAATATAGAGGAAGTATTTATGCCGTGAAATTTTATTGATGTTGAGAAGAATCGTTATCTATACTTGGAGACGAATGTct                                                                                         >  2:221748/1‑140 (MQ=16)

                                                  tCTATAAATATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCgg                                                                                        <  1:263735/141‑1 (MQ=255)

                                                   cTATAAAGATGAT‑GCTTTTGACGAGATGGAAGATAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCAGAGAAAATTTATTGATGTTGAGAAAAACCATTAACTAAACTTGCAGCCGAATGTctcc                                                                                       >  2:138497/1‑138 (MQ=37)

                                                     ataAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                     <  1:47904/141‑1 (MQ=255)

                                                     aaaaaGATGAT‑GCTTTTGTAGTACGGGACAGAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                     <  1:268254/139‑1 (MQ=18)

                                                      taAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                    <  2:276727/141‑1 (MQ=255)

                                                      taAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                    >  2:75227/1‑141 (MQ=255)

                                                       aaaGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAg                                                                                   >  1:248996/1‑141 (MQ=255)

                                                       aaaGATGAT‑GATTTTGACGAAATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTACCTAAACTTGCAGACGAATGTCGGCATAg                                                                                   <  2:346964/141‑1 (MQ=255)

                                                        aaGATGAT‑GTTTTTGAAGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                  <  2:248655/141‑1 (MQ=255)

                                                         aGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGGAGTCGAATGTCGGCATAGCg                                                                                 >  1:339652/1‑141 (MQ=255)

                                                             aat‑gCTTTTGAAGAAATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAg                                                                             <  2:60224/140‑1 (MQ=255)

                                                                 gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                          >  1:366227/1‑141 (MQ=255)

                                                                 gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                          >  1:288992/1‑141 (MQ=255)

                                                                 gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                          >  2:229915/1‑141 (MQ=255)

                                                                 gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                          >  1:74571/1‑141 (MQ=255)

                                                                  cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                         >  2:359612/1‑141 (MQ=255)

                                                                  cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                         >  2:397054/1‑141 (MQ=255)

                                                                   ttttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATCTTGAGAAGAACCCTTAACTAAACTTACAGACTAATGTCGGCATAGCCTGAGCTAtt                                                                        >  2:288509/1‑141 (MQ=255)

                                                                    tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGACATAGCGTGAGCTATTa                                                                       >  2:266180/1‑141 (MQ=255)

                                                                       aaCGAGTTGGAAGAAAAATATGATTATCATTAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                    <  2:389436/140‑1 (MQ=255)

                                                                         cGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCg                                                                  <  1:173214/141‑1 (MQ=255)

                                                                         cGAGATAGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCg                                                                  <  1:219989/141‑1 (MQ=255)

                                                                            gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGATGATGAATGTCGACATAGCGTGAGCTATTAAGACGaac                                                               >  2:194180/1‑139 (MQ=21)

                                                                               ggAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAtt                                                            <  2:315137/141‑1 (MQ=255)

                                                                                gaagaaAAATATGATTATCATGAAGAAAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTCATGTTGAGAAGAACCCTTAACTAAACAAGCAAACGAATGTCGGCAAAACGTGCGCTATTAAAACGAACAtaa                                                           >  2:123208/1‑139 (MQ=18)

                                                                                 aagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCTGCATAGCGTGAGCTATTAAGCCCACCAATCg                                                          >  2:383215/1‑141 (MQ=255)

                                                                                 aagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAAATTGCAGACGAATGTAGGCATAGCGTGAGCTATTAAGCAGACCATTCg                                                          >  1:53617/1‑141 (MQ=255)

                                                                                   gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                        <  1:306675/141‑1 (MQ=255)

                                                                                   gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACACTTAACTAAACTTGCAGACGCATGTCGACATAGCTAGCGCAATTAAGCCTACCAtcagac                                                        >  2:213421/1‑136 (MQ=18)

                                                                                     aaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACaa                                                      >  2:33927/1‑141 (MQ=255)

                                                                                       aaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                    <  1:2346/141‑1 (MQ=255)

                                                                                       aaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                    >  2:363659/1‑141 (MQ=255)

                                                                                       aaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                    <  1:204392/141‑1 (MQ=255)

                                                                                         tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                  <  2:106909/141‑1 (MQ=255)

                                                                                         tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                  >  1:382547/1‑141 (MQ=255)

                                                                                         tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                  <  1:11716/141‑1 (MQ=255)

                                                                                         tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                  >  1:259248/1‑141 (MQ=255)

                                                                                          atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                 <  1:147324/141‑1 (MQ=255)

                                                                                           tGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTg                                                >  1:19565/1‑141 (MQ=255)

                                                                                             aTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTggg                                              <  1:302652/141‑1 (MQ=255)

                                                                                             aTTATCATGAAGATAATAAAAAATAGACGACGAATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTggg                                              >  2:352726/1‑141 (MQ=255)

                                                                                                     gAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTaa                                      <  1:37986/141‑1 (MQ=255)

                                                                                                     gAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTaa                                      >  2:320591/1‑141 (MQ=255)

                                                                                                       aGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAgg                                    >  2:307772/1‑141 (MQ=255)

                                                                                                        gATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAggg                                   <  1:11362/141‑1 (MQ=255)

                                                                                                        gATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAggg                                   >  1:357477/1‑141 (MQ=255)

                                                                                                          taataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTAGAGACGAACCCGTAGCTGAACTGGCAGACGAATGTCGGCATAGCGTGAGCTAATAAGCCGACCATCCGACAAGTTTTGAGATTGTTAAGGGtg                                 >  2:101306/1‑140 (MQ=14)

                                                                                                            ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                               >  1:313579/1‑141 (MQ=255)

                                                                                                              aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTAATATTGAGAAGACCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGAGAGAATTCAATCCGACCATTCAACACGTTTTGGGATTGTTAAGGGTTCCGa                             >  2:83085/1‑141 (MQ=14)

                                                                                                                aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                           <  1:229504/141‑1 (MQ=40)

                                                                                                                 aaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGc                          <  2:171590/141‑1 (MQ=39)

                                                                                                                     atacgacgCATTTATGCCTAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCaa                      <  1:328948/139‑1 (MQ=21)

                                                                                                                     aGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTACACAAGTGTTGGGATTGTTAAAGTTTCCGAgggtaaa                      >  1:79340/1‑136 (MQ=11)

                                                                                                                      gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                     >  1:360989/1‑141 (MQ=35)

                                                                                                                         gaagCATTTATGTCGAGAAAATTTATTGATGTTGGGAAGAACCCTTAACTAAACGTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTc                  <  2:157787/138‑1 (MQ=255)

                                                                                                                            gCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAAt               <  1:62097/141‑1 (MQ=32)

                                                                                                                            gCATTTATGCAGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAAt               <  1:29254/141‑1 (MQ=17)

                                                                                                                             cATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTGGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa              <  1:142406/141‑1 (MQ=17)

                                                                                                                               tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaa            >  2:133671/1‑141 (MQ=32)

                                                                                                                               tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCCACAATTCTACAATCTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaa            >  1:128886/1‑141 (MQ=11)

                                                                                                                               tttATGCAGAGAAAATTTATAGGTGTTGAGAAGAACCGTTAACTAAACTTGCAGACGTATGTCGGGATAGGGTGAGCTATAAAGCCGCCCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaa            <  2:118965/141‑1 (MQ=11)

                                                                                                                                ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGGATGTATATCCTTCGGGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAg           <  1:393773/141‑1 (MQ=11)

                                                                                                                                ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAg           <  1:213182/141‑1 (MQ=32)

                                                                                                                                 tATGCCGAGAAAATTTATTGATGTTGAGAAGAACCGTTAACTAAAGTTGCAGACGAATGTTGGCATAGCGTGAGCTATTAAGCCGACCAGTCGAAAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTGAACGTCAATAAAGc          <  2:393499/141‑1 (MQ=11)

                                                                                                                                   tGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCaa        >  1:317027/1‑141 (MQ=32)

                                                                                                                                       gagaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTgg    >  1:32378/1‑141 (MQ=32)

                                                                                                                                       gagaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTgg    >  1:348840/1‑141 (MQ=32)

                                                                                                                                       gagaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTGTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTgg    <  2:203512/141‑1 (MQ=17)

TTCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGAT‑GCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAA  >  NC_012417/1806‑2082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.