| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1665543 = | 22 (0.970) | 3 (0.140) | 3/254 | 2.6 | 13.0% | coding (270/411 nt) | zur | Zinc‑specific metallo‑regulatory protein |
| ? | USA300TCH1516_ALE | = 1665539 | 20 (0.960) | coding (274/411 nt) | zur | Zinc‑specific metallo‑regulatory protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACAACAAGTTATGGATGAAAATTATCCTGGAATTTCATTCGACACAATATATAGAAACCTGCACTTATTTAAAGATTTAGGAATTATTGAAAATACAGAACTTGATGGTGAAATGAAGTTTAGAATCGCTTGTACAAACCATCATCATCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1665693‑1665543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcatcatcatTTTATCTGTGAAAAGTGTGGAGATACAAAGGTAATAGATTATTGTCCAATAGATCAGATAAAATTATCACTACCTGGTGTTAATATTCACAAACACAAACTTGAAGTTTATGGTGTATGTGAGTCTTGCC < USA300TCH1516_ALE/1665539‑1665410 ACAACAAGTTATGGATGAAAATTATCCTGGAATTTCATTCGACACAATATATAGAAACCTGCACTTATTTAAAGATTTAGGAATTATTGAAAATACAGAACTTGATGGTGAAATGAAGTTTAGAATCGCTTGTACAAACC < 2:51921/140‑1ACAACAAGTTATGGATGAAAATGATCCTGGAATTTCATTCGACACAATATATAGAAACCTGCACTTATTTAAAGATTTAGGAATTATTGAAAATACAGAACTTGATGGTGAAATGAAGTTTAGAATCGCTTGTACAAACC < 2:236122/140‑1 ACAAGTTATGGATGAAAATTATCCTGGAATTTCATTCGACACAATATATAGAAACCTGCACTTATTTAAAGATTTAGGAATTATTGAAAATACAGAACTTGATGGTGAAATGAAGTTTAGAATCGCTTGTACAAACCATC > 2:192304/1‑140 ACTTATTTAAAGATTTAGGAATTATTGAAAATACAGAACTTGATGGTGAAATGAAGTTTAGAATCGCTTGTACAAACCATCATCATCATTTTATCTGTGAAAAGTGTGGAGATACAAAGGTAATAGATTATTGTCCAATA > 2:117841/1‑140 ATGGTGAAATGAAGTTTAGAATCGCTTGTACAAACCATCATCATCATTTTATCTGTGAAAAGTGTGGAGATACAAAGGTAATAGATTATTGTCCAATAGATCAGATAAAATTATCACTACCTGATGTTAATATTCACAAA > 2:175363/1‑140 TAGAATCGCTTGTACAAACCATCATCATCATTTTATCTGTGAAAAGTGTGGAGATACAAAGGTAATAGATTATTGTCCAATAGATCAGATAAAATTATCACTACCTGGTGTTAATATTCACAAACACAAACTTGAAGTTT < 1:117841/140‑1 ttagCATTATGTTATCTGTGAAAAGTGTGGAGATACAAAGGTAATAGATTATTGTCCAATAGATCAGATAAAATTATCACTACCTGGTGTTAATATTCACAAACACAAACTTGAAGTTTATGGTGTATGTGAGTCTTtcc < 1:192304/136‑4 tccaCATCAGTTTATCTGTGAAAAGTGTGGAGATACAAAGGTAATAGATTATTGTCCAATAGATCAGATAAAATTATCACTACCTGGTGTTAATATTCACAAACACAAACTTGAAGTTTATGGTGTATGTGAGTCTTGCC < 1:60033/136‑1 ACAACAAGTTATGGATGAAAATTATCCTGGAATTTCATTCGACACAATATATAGAAACCTGCACTTATTTAAAGATTTAGGAATTATTGAAAATACAGAACTTGATGGTGAAATGAAGTTTAGAATCGCTTGTACAAACCATCATCATCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1665693‑1665543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcatcatcatTTTATCTGTGAAAAGTGTGGAGATACAAAGGTAATAGATTATTGTCCAATAGATCAGATAAAATTATCACTACCTGGTGTTAATATTCACAAACACAAACTTGAAGTTTATGGTGTATGTGAGTCTTGCC < USA300TCH1516_ALE/1665539‑1665410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |