Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	983737	983785	49	2 [1]	[0] 2	[USA300TCH1516_00912]	[USA300TCH1516_00912]

CCTGATCAAGATCATCAATATGAATTAACAGTTTATGCGTTAGATCATTCTTTAAATTTGAAGAATGGGTTCTACTTGAATGAATTTTTAAAAGAAGTAAATCAACATAAAATTGATCAAACAAGTATTAACCTTATAGGAAGAAAAATTTAATACTA  >  USA300TCH1516_ALE/983596‑983753                                                                                                                                             |                  ccTGAGCAAGTTCATCAATATGAATTAACAGTTTATGCGTTAGATCATTCTTTAAATTTGAAGAATGGGTTCTAAGTGAATGAATTTTTAAAAGAAGTAAATCAACATAAAATTGATCAAACAAGTATTACCCTTATAGga                   <  2:91212/141‑1 (MQ=255)                  atatGAATTAACAGTTTATGCGTTAGATCATTCTTTAAATTTGAAGAATGGGTTCTACTTGAATGAATTTTTAAAAGAAGTAAATCAACATAAAATTGATCAAACAAGTATTAACCTTATAGGAAGAAAAATTTAATACTa  >  1:363/1‑141 (MQ=255)                                                                                                                                             |                  CCTGATCAAGATCATCAATATGAATTAACAGTTTATGCGTTAGATCATTCTTTAAATTTGAAGAATGGGTTCTACTTGAATGAATTTTTAAAAGAAGTAAATCAACATAAAATTGATCAAACAAGTATTAACCTTATAGGAAGAAAAATTTAATACTA  >  USA300TCH1516_ALE/983596‑983753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑