Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	983737	983785	49	2 [1]	[0] 2	[USA300TCH1516_00912]	[USA300TCH1516_00912]

AAGTACAAAGAAACAAAGGTTTTAATTTATATATTAGGTACGGCGTTCGCTATAATGCAAAGAAGTAATTAAATTTAAGAAATGTAAACTTAGTTATTGTAATGTGAATTTATTTGAAAAAATAGAAAGTATTAACAATTA  >  USA300TCH1516_ALE/983786‑983926 |                                                                                                                                             aaGTACAAAGAAACAAAGGTTTTAATTTATATATTAGGTACGGCGTTCGCTATAATGCAAAGAAGTAATTAAATTTAAGAAATGTAAACTTAGTTATTGTAATGTGAATTTATTTGAAAAAATAGAAAGTATTAACAATta  >  1:126887/1‑141 (MQ=255) aaGTACAAAGAAACAAAGGTTTTAATTTATATATTAGGTACGGCGTTCGCTATAATGCAAAGAAGTAATTAAATTTAAGAAATGTAAACTTAGTTATTGTAATGTGAATTTATTTGAAAAAATAGAAAGTATTAACAATta  >  2:52829/1‑141 (MQ=255) |                                                                                                                                             AAGTACAAAGAAACAAAGGTTTTAATTTATATATTAGGTACGGCGTTCGCTATAATGCAAAGAAGTAATTAAATTTAAGAAATGTAAACTTAGTTATTGTAATGTGAATTTATTTGAAAAAATAGAAAGTATTAACAATTA  >  USA300TCH1516_ALE/983786‑983926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑