Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1320703	1320717	15	2 [1]	[0] 2	mutS_1	DNA mismatch repair protein MutS

AATTTTAAAAAGAGACAAGGGTTGTGAAGAAATAATATGTCTAATGTTACACCAATGATGCAGCAATATTTAAAAATAAAATCAGAATACCAAGATTGCTTATTATTTTTTAGACTAGGTGATTTCTATGAAATGTTTTATGAAGATG  >  USA300TCH1516_ALE/1320562‑1320709                                                                                                                                             |        aaTTTTAAAAAGAGACAAGGGTTGTGAAGAAATAATATGTCTAATGTTACACCAATGATGCAGCAATATTTAAAAATAAAATCAGAATACCAAGATTGCTTATTATTTTTTAGACTAGGTGATTTCTATGAAATGTTTTAt         >  1:47089/1‑141 (MQ=255)        aaaaGAGACAAGGGTTGTGAAGAAATAATATGTCTAATGTTACACCAATGATGCAGCAATATTTAAAAATAAAATCAGAATACCAAGATTGCTTATTATTTTTTAGACTAGGTGATTTCTATGAAATGTTTTATGAAGATg  <  1:68665/141‑1 (MQ=255)                                                                                                                                             |        AATTTTAAAAAGAGACAAGGGTTGTGAAGAAATAATATGTCTAATGTTACACCAATGATGCAGCAATATTTAAAAATAAAATCAGAATACCAAGATTGCTTATTATTTTTTAGACTAGGTGATTTCTATGAAATGTTTTATGAAGATG  >  USA300TCH1516_ALE/1320562‑1320709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑