Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1337231	1337284	54	2 [1]	[1] 2	glnA	Glutamine synthetase

AGATTTAGGCTTCACAGACTTTAACCTAGGGCCTGAACCAGAATTCTTCTTGTTTAAGTTGGATGAAAAAGGGGAACCAACTTTAGAACTTAATGATGATGGTGGATATTTCGATTTAGCACCTACAGATTTAGGTGAAAACTG  >  USA300TCH1516_ALE/1337090‑1337233                                                                                                                                             |    aGATTTAGGCTTCACAGACTTTAACCTAGGGCCTGAACCAGAATTCTTCTTGTTTAAGTTGGATGAAAAAGGGGAACCAACTTTAGAACTTAATGATGATGGTGGATATTTCGATTTAGCACCTACAGATTTAGGTGaaaa     >  2:58753/1‑141 (MQ=255)    tttAGGCTTCACAGACTTTAACCTAGGGCCTGAACCAGAATTCTTCTTGTTTAAGTTGGATGAAAAAGGGGAACCAACTTTAGAACTTAATGATGATGGTGGATATTTCGATTTAGCACATACAGATTTAGGTGAAAACTg  <  1:17609/141‑1 (MQ=255)                                                                                                                                             |    AGATTTAGGCTTCACAGACTTTAACCTAGGGCCTGAACCAGAATTCTTCTTGTTTAAGTTGGATGAAAAAGGGGAACCAACTTTAGAACTTAATGATGATGGTGGATATTTCGATTTAGCACCTACAGATTTAGGTGAAAACTG  >  USA300TCH1516_ALE/1337090‑1337233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑