Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1166331	1166471	141	2 [1]	[0] 2	[USA300HOU_RS05790]	[USA300HOU_RS05790]

TCTTTATGGGTGTGGTATTTATCTTTATAGGATATATTTCACTGGCAATATCTGCCGTAATTATTTATGGTATTATTCAATTTATCACAATTGATTTTGGTAGTTTTTTCTTAATGGGTATTATATTGATCTTGATTTCAA  >  USA300TCH1516_ALE/1166472‑1166612 |                                                                                                                                             tctTTATGGGTGTGGTATTTATCTTTATAGGATATATTTCACTGGCAATATCTGCCGTAATTATTTATGGTATTATTCAATTTATCACAATTGATTTTGGTAGTTTTTTCTTAATGGGTATTATATTGATCTTGATTTCaa  <  2:117080/141‑1 (MQ=255) tctTTATGGGTGTGGTATTTATCTTTATAGGATATATTTCACTGGCAATATCTGCCGTAATTATTTATGGTATTATTCAATTTATCACAATTGATTTTGGTAGTTTTTTCTTAATGGGTATTATATTGATCTTGATTTCaa  >  2:125077/1‑141 (MQ=255) |                                                                                                                                             TCTTTATGGGTGTGGTATTTATCTTTATAGGATATATTTCACTGGCAATATCTGCCGTAATTATTTATGGTATTATTCAATTTATCACAATTGATTTTGGTAGTTTTTTCTTAATGGGTATTATATTGATCTTGATTTCAA  >  USA300TCH1516_ALE/1166472‑1166612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑