Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1655866	1655923	58	2 [1]	[1] 2	epsF	Type II secretion system protein F

AGTTTTTCTAAAATTTGAGGCAAACCATATCCCATTTCTGAATAAGTTAATAAGTATTTACCTAGAAACTGTCTAAATGGATCACTACTATGGTTAATATAAACGTCTACTATTGATTGAAGTGTAATACCATTTTTATAAAACAACACTAATTCATTAGTTACAAAAT  >  USA300TCH1516_ALE/1655896‑1656064                             |                                                                                                                                             aGTTTTTCTAAAATTTGAGGCAAACCATATCCCATTTCTGAATAAGTTAATAAGTATTTACCTAGAAACTGTCTAAATGGATCACTACTATGGTTAATATAAACGTCTACTATTGATTGAAGTGTAATACCATTTTTATaa                              >  2:13217/1‑141 (MQ=255)                             atCCCATTTCTGAATAAGTTAATAAGTATTTACCTAGAAACTGTCTAAATGGATCACTACTATGGTTAATATAAACGTCTACTATTGATTGAAGTGTAATACCATTTTTATAAAACAACACTAATTCATTAGTTACAAAAt  >  1:12280/1‑141 (MQ=255)                             |                                                                                                                                             AGTTTTTCTAAAATTTGAGGCAAACCATATCCCATTTCTGAATAAGTTAATAAGTATTTACCTAGAAACTGTCTAAATGGATCACTACTATGGTTAATATAAACGTCTACTATTGATTGAAGTGTAATACCATTTTTATAAAACAACACTAATTCATTAGTTACAAAAT  >  USA300TCH1516_ALE/1655896‑1656064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑