BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 1982	955 (0.880)	6 (0.010)	4/244	NT	0.66%	intergenic (+215/+111)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
*	?	NC_012417	= 2027	895 (0.870)	6 (0.010)	4/244	NT	0.66%	intergenic (+260/+66)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 136 total aligned reads displayed.

GTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTT‑‑‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/1837‑1982

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaactt‑‑‑gTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTT  <  NC_012417/2027‑1889

GTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGGAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑A                                                                                                                                                      >  2:383723/1‑140

GTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGACACTTTATTGATGTTGAGAAGACCCCTTAAC‑‑T‑‑‑‑A                                                                                                                                                      >  2:187159/1‑140

GTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑A                                                                                                                                                      >  1:923/1‑140

GTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑A                                                                                                                                                      >  1:640941/1‑140

GTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑A                                                                                                                                                      >  2:548560/1‑140

GTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑A                                                                                                                                                      >  1:46070/1‑140

GTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑A                                                                                                                                                      <  1:454098/140‑1

GTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑A                                                                                                                                                      >  1:365012/1‑140

 tttCTTACTTTATGGTTTTCTAGAAGGATGATGCGTTTGAGGAGATGGAAGAAAAATATGATTATCATAAAGATAATAAAAAAGAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AA                                                                                                                                                     <  2:348438/137‑1

 TTGCTTACTTTTTGTTTTTCTATAAAGATGATTCTTTTGACGTGATGGTAGAAAAATATGATTATCATGAAGATAATAACAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AA                                                                                                                                                     >  2:677212/1‑140

 TTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTTTCATGAAGATAATAAAACATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACTCTTAAC‑‑T‑‑‑‑AA                                                                                                                                                     >  2:575112/1‑140

 TTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AA                                                                                                                                                     <  1:228733/140‑1

 TTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AA                                                                                                                                                     <  2:210493/140‑1

 TTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AA                                                                                                                                                     <  1:411955/140‑1

 TTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AA                                                                                                                                                     <  1:341788/140‑1

 TTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGACTATCATGAAGATAATGAAAAATAGAGGACGCAGGTATGCCGAAAAAATTTATTGATGTTGAGAAAAAACCTTAAC‑‑T‑‑‑‑AA                                                                                                                                                     >  2:455459/1‑140

 TTGCTTACTTTTTGGTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AA                                                                                                                                                     <  1:579047/140‑1

 TTGCTTACTTGTTGGTTTTCTATAAAGATGATGCTTTTGAAGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AA                                                                                                                                                     <  2:172720/140‑1

 TTGCTTACTATTTGTCTTTCTATAAAGATGATGCTTGTGACGAAAGGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AA                                                                                                                                                     <  2:694473/140‑1

 TTGCTTAATTTTTGTTTTTATATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AA                                                                                                                                                     <  2:405726/140‑1

  tggTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACTAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAA                                                                                                                                                    <  2:669640/137‑1

  TGCTTACTTTTTGTTTTTCTATAAAGTTGGTGAAGGCGACGAGATGGAAGTAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAACATTTATTGATGTTGAGAAAAACACTTAAC‑‑T‑‑‑‑AAA                                                                                                                                                    >  2:345088/1‑140

  TGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGTAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAA                                                                                                                                                    <  1:388354/140‑1

  TGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAA                                                                                                                                                    <  1:363565/140‑1

  TGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAA                                                                                                                                                    <  1:20648/140‑1

  TGCTTACTTTCTGTTTTTCTATAAAGATGATGCTTTTGACGAGACGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAA                                                                                                                                                    <  1:248076/140‑1

   GCTTACTTTTTGTTTTTCTATAAAGATGGTGCTTGTGACGAGATGGAAGTAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGACCACTTAAC‑‑T‑‑‑‑GAAg                                                                                                                                                   >  2:36199/1‑139

   GCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCTTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCGTTAAC‑‑T‑‑‑‑TAAC                                                                                                                                                   >  2:606912/1‑140

   GCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGCGAAAATTTATTGATCTTGAGAAGAACCGTTAAC‑‑T‑‑‑‑AAAC                                                                                                                                                   >  2:575157/1‑140

   GCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAACATTTATTGATGTTGAGAAGATGCCTTATC‑‑C‑‑‑‑AAAC                                                                                                                                                   >  1:189981/1‑140

   GCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAAC                                                                                                                                                   >  2:331672/1‑140

   GCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAAC                                                                                                                                                   <  1:442748/140‑1

   GCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAAC                                                                                                                                                   >  1:300409/1‑140

   GCTTACTTTTTGTTTGTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAAC                                                                                                                                                   <  1:337274/140‑1

   GCTTACTTATTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAAC                                                                                                                                                   <  1:266584/140‑1

    CTTACTTTTTGTTTTTCTATAAATATGATGCTTTTGACGAGATGGAAGATAAATATGATTATTAGGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAGAATTTATTGATGTTGATAAGAACTCTTAAC‑‑T‑‑‑‑AAACT                                                                                                                                                  >  2:407617/1‑140

    CTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGTAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACT                                                                                                                                                  >  2:540020/1‑140

    CTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATTCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACT                                                                                                                                                  >  1:321641/1‑140

    CTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACT                                                                                                                                                  >  1:278983/1‑140

    CTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAAACCTTAAC‑‑T‑‑‑‑AAACT                                                                                                                                                  >  1:136368/1‑140

     TTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGCAGACCCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTT                                                                                                                                                 >  1:520629/1‑140

     TTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGACGAACCCTTAAC‑‑T‑‑‑‑AAACTT                                                                                                                                                 >  2:454303/1‑140

     TTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTT                                                                                                                                                 >  2:431509/1‑140

      cacgTTTTGTTTTTCTATAAAGATGATGCTGTTGACGAGAGGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTT‑‑‑G                                                                                                                                             <  1:238913/136‑1

      TACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTT‑‑‑G                                                                                                                                             <  1:494874/140‑1

      TACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATATTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTT‑‑‑G                                                                                                                                             >  1:491130/1‑140

      TACTTTTTGTTTTTCTATAAAGATGATGCTTATGACGAGATGTAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTT‑‑‑G                                                                                                                                             <  1:25161/140‑1

           TTTGTTTTTCTATAAAGATGTTGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGATGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGACACCTGAAC‑‑T‑‑‑‑GAACTT‑‑‑GACGAc                                                                                                                                        >  2:722832/1‑139

           TTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGATAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCTGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTT‑‑‑Gaagcc                                                                                                                                        >  2:432774/1‑135

                                           AGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGGTCGGCTTAATAGCTCACGCTATGCCG                                                                                                           <  2:321263/140‑1

                                                   GAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTG                                                                                                <  2:175380/140‑1

                                                    AAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGC                                                                                               <  1:465199/140‑1

                                                        ATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACAATCCCAAAACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCT                                                                                                 <  2:580661/140‑1

                                                                                                                                               caaagcgT‑‑‑GTCGAGTGGGCGGCGTAAGAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATC          <  1:261366/133‑1

                                                                                                                                                agaatTT‑‑‑GTCGAATGTCCGGCTTGCTAGTTCTCGCTATGCCGACATTCGGCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAGGCGTCGTCTATTTTTTATTATCTTCATGATAATCA         <  2:696988/135‑1

                                                                                                                                                acAACAT‑‑‑GTCGAATAGTTGGTCCAACACCGCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCA         >  2:747522/3‑140

                                                                                                                                                 AAACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACCTTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCAT        <  1:64346/140‑1

                                                                                                                                                 AAACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCAT        <  2:417512/140‑1

                                                                                                                                                 AAACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCAT        >  1:598285/1‑140

                                                                                                                                                 AAACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCAT        <  1:735269/140‑1

                                                                                                                                                 AAACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGACATAAATGTGTCGTCTATTTTTTATTATCTTCATCATAATCAT        >  1:492508/1‑140

                                                                                                                                                  tACTT‑‑‑GTCGAATGGTCGGCGTGATAGCTCACGCTATGCCTACATTCGTCTTCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATA       <  2:640236/139‑1

                                                                                                                                                  atCTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATA       <  2:20151/138‑1

                                                                                                                                                  AACTT‑‑‑GTCGAATGGTCGGCTTACTAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATA       >  1:664352/1‑140

                                                                                                                                                  AACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATA       >  2:22259/1‑140

                                                                                                                                                  AACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAACGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATATTTTATTATTTTCATTATCATCAga       >  2:136158/1‑138

                                                                                                                                                  AACTT‑‑‑GTCGAATGGTCGGCTTAAGAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATA       <  2:443369/140‑1

                                                                                                                                                   gCTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATAT      <  2:210045/139‑1

                                                                                                                                                   accT‑‑‑GTTGAATGGTCCGCTTGATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATAT      <  2:583374/137‑1

                                                                                                                                                   ACTT‑‑‑GTCGAATGGTCGGCTTCATAGCTCGCGCTATGCCGACAGTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATAT      <  1:685141/140‑1

                                                                                                                                                   ACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTACGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGCTAATCATAT      >  1:742228/1‑140

                                                                                                                                                   ACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATTTTCGTGATAATCTTAT      >  2:319997/1‑140

                                                                                                                                                   ACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCTTGATAATCATct      >  2:565331/1‑138

                                                                                                                                                   ACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATAT      >  1:630987/1‑140

                                                                                                                                                   ACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATAT      >  1:511524/1‑140

                                                                                                                                                   ACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATAT      >  2:254554/1‑140

                                                                                                                                                   ACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATAT      >  1:425783/1‑140

                                                                                                                                                   ACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATAT      <  1:422929/140‑1

                                                                                                                                                   ACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATAT      >  1:296944/1‑140

                                                                                                                                                   ACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATAT      >  1:200085/1‑140

                                                                                                                                                   ACTC‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATAT      <  2:242624/140‑1

                                                                                                                                                    CTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTCTTTTTTATTGTCTTCATTATAACCATATT     >  2:521348/1‑140

                                                                                                                                                    CTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATT     >  1:563761/1‑140

                                                                                                                                                     TT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGTCGACATTCTTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTT    <  1:367112/140‑1

                                                                                                                                                     TT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGTCATAAATGCGTCCTCTGTTTTTTATTATCTTCTTGCTACTCATTTTT    >  1:12906/1‑140

                                                                                                                                                     TT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTT    <  1:964/140‑1

                                                                                                                                                     TT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTT    <  2:667928/140‑1

                                                                                                                                                     TT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTT    <  1:303623/140‑1

                                                                                                                                                     TT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTT    <  1:228730/140‑1

                                                                                                                                                      T‑‑‑GTCTAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTGAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTT   <  1:526632/140‑1

                                                                                                                                                      T‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTTAGTGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTT   >  1:107906/1‑140

                                                                                                                                                      T‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTT   <  2:585149/140‑1

                                                                                                                                                      T‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTT   <  1:572540/140‑1

                                                                                                                                                          GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTTAACATCAATAAATTTTCTCGGCATAAATGCGTCGTATATTATTTATTATCTTCATGATAATCATATTTTT  >  2:614630/1‑140

                                                                                                                                                          GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTT  <  2:321613/140‑1

                                                                                                                                                          GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTT  >  2:143288/1‑140

                                                                                                                                                          GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTT  >  1:97935/1‑140

                                                                                                                                                          GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTT  >  1:558490/1‑140

                                                                                                                                                          GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTT  <  2:9230/140‑1

                                                                                                                                                          GTCGAATGGTCGGCTTAATAGCTCACGCTATACCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATCTTTTT  >  1:607804/1‑140

GTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTT‑‑‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/1837‑1982

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaactt‑‑‑gTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTT  <  NC_012417/2027‑1889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.