mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 512,643 | 0 | A | G | 39.5% | 28.3 / 41.1 | 43 | intergenic (+711/‑6052) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| * | USA300TCH1516_ALE | 111,516 | 0 | C | A | 32.0% | 27.9 / 17.3 | 26 | Q196K (CAA→AAA) | USA300HOU_RS00520 | putative lipoprotein |
| * | USA300TCH1516_ALE | 1,583,817 | 0 | C | A | 29.2% | 25.8 / 13.5 | 24 | S67I (AGT→ATT) | USA300HOU_RS07760 | hypothetical protein |
| * | USA300TCH1516_ALE | 517,732 | 0 | T | C | 28.6% | 20.5 / 15.0 | 28 | intergenic (+5800/‑963) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| * | USA300TCH1516_ALE | 111,512 | 0 | A | G | 26.7% | 43.6 / 15.8 | 30 | S194S (TCA→TCG) | USA300HOU_RS00520 | putative lipoprotein |