New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 19541427 (0.930)6 (0.000) 5/242 NT 0.44% intergenic (+187/+139) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
?NC_012417 = 2064 1357 (0.940)intergenic (+297/+29) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 229 total aligned reads displayed.

CACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/1808‑1954
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttattgaCGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTC  <  NC_012417/2064‑1926
                                                                                                                                                                                                                                                                                              
CACAGTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAT                                                                                                                                                    <  1:531443/140‑1
CACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGAATTTATGCCGAGAAAAT                                                                                                                                                    >  2:287745/1‑140
 ACACTGTTTTTTTATTCCTATTTGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATT                                                                                                                                                   <  1:563787/140‑1
 ACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGATGAAAAATATGATTATCATGAAGATAATAAAAAATAGGCGACGCATTTATGCCGAGAAAATT                                                                                                                                                   >  2:518918/1‑140
 ACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCCTGAAGATAATAAAAAATAGACGTAGCAGTCAAGCCGAAACAATT                                                                                                                                                   >  2:108192/1‑140
 ACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATT                                                                                                                                                   >  2:635418/1‑140
 ACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATAATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATT                                                                                                                                                   >  1:546590/1‑140
  CACTTTTTTTTTATTCCTATTTGTTTTGGTTCGTACTTTTTGTTATTCTATAAAGATGATGCTTTTGACGAGATGGATAAAAAATATAATTAACATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTT                                                                                                                                                  <  2:613078/140‑1
  CACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTTACGAGATGGATGAAAAATATTATTTTCATGAAGATAATAAAAAATAGACTACGCATTTATGCCAAGATCATTT                                                                                                                                                  >  2:472055/1‑140
  CACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATTGAGTAAAAATCTGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTT                                                                                                                                                  <  1:481724/140‑1
  CACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTT                                                                                                                                                  >  1:230065/1‑140
  CACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTT                                                                                                                                                  >  2:650379/1‑140
  CACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTT                                                                                                                                                  <  1:420771/140‑1
    CTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTAT                                                                                                                                                >  1:148185/1‑140
    CTGTTTTTTTATTCATATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGATGAAAAATATGATTATCATGATGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTAT                                                                                                                                                >  2:468977/1‑140
     gGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATT                                                                                                                                               <  2:176319/139‑1
     gGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTGTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATAGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATT                                                                                                                                               <  2:509604/139‑1
     TGTTTTTTTATTGCTATTTGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATT                                                                                                                                               <  2:570925/140‑1
     TGTTTTTTTATTCCTATTTGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATCCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATT                                                                                                                                               <  2:383008/140‑1
     TGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAGAATTTATT                                                                                                                                               >  1:574613/1‑140
     TGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATT                                                                                                                                               <  1:645594/140‑1
     TGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATT                                                                                                                                               >  2:225766/1‑140
     TGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATT                                                                                                                                               <  1:153585/140‑1
     TGTTTTTTAATTTTTATTGGTTTTGTAGATTACTTATTGTTTATCTATAAAGATGATGCTTTTGACGAGATAGAAGAAAAATATGATTATAAAAAAGAAAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATT                                                                                                                                               <  2:704785/140‑1
     TGTTTTTGTATTCCTATTGGTGTGGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATT                                                                                                                                               <  1:648202/140‑1
     TGTTTCTTTATTCCTATTTGTTTTGTTTCTTACATTTTGTTTTTCTATAAATAGGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGACAAAATTTATT                                                                                                                                               <  2:88616/140‑1
      ggTTTTTTGTTCCTATTGGTGTTGTTGCTGACTTTTTGTTTTTCTATATAGATGTTGCTTTTTACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACTACGCATTTATGCCGAGAAAATTTATTG                                                                                                                                              <  2:211994/138‑1
      GTTTTTTTATTCCTATTGGTGTTTTGGGTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTG                                                                                                                                              <  1:583861/140‑1
      GTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTG                                                                                                                                              >  1:226260/1‑140
       TTTTTTTTTTTTTTTTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAATATGATGCTTTTGACGAGATGGAAGTAAAATATGTTTATCATGAAGATTATAAATAATAGACGACGCATTTATGCCGAGAAACTTTTTTta                                                                                                                                             >  2:155605/1‑138
       TTTTTTTATTCGTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTGGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGA                                                                                                                                             <  2:245902/140‑1
       TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTTTTTTTCTATAAAGATGATGTTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGA                                                                                                                                             <  1:451718/140‑1
       TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGA                                                                                                                                             <  2:255704/140‑1
       TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGA                                                                                                                                             <  2:187010/140‑1
       TTTTTTTATTCCTATTGGTGTTGTTGATTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGA                                                                                                                                             <  2:419608/140‑1
       TTTTTTTATTCCTATAGGTTTTGTTTCTTACTTTTTATATTTCTATAAAGATGATGCTGTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATcac                                                                                                                                             <  2:678275/140‑4
                                                                                                         ATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATCAGTCTGCAAGTATAGGTAAGGG                                           >  2:414783/1‑140
                                                                                                                                         gcgTTAGTGACGTTGAGCCGCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCAT           <  1:47724/137‑1
                                                                                                                                           TTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCCAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAA         <  2:552794/140‑1
                                                                                                                                           TTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAA         >  2:43981/1‑140
                                                                                                                                           TTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAA         <  1:273109/140‑1
                                                                                                                                           TTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAA         >  2:121498/1‑140
                                                                                                                                           TTTATTGACCTTACGCCTCGGAGCCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAA         <  1:93210/140‑1
                                                                                                                                            ttcTTGACGTTGCGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAA        <  1:28607/137‑1
                                                                                                                                            TTATTGACGTTGTGCCTCGGTACCCTTAACAATCCCGTAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAA        <  2:619789/140‑1
                                                                                                                                            TTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGTATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAA        <  2:341558/140‑1
                                                                                                                                            TTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTGACGCTATGCCGCCATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAACTTTTCTCGGCATAAA        >  1:193837/1‑140
                                                                                                                                            TTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAA        >  1:136499/1‑140
                                                                                                                                            TTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAA        >  1:188756/1‑140
                                                                                                                                            TTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAA        <  1:293854/140‑1
                                                                                                                                            TTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAA        >  1:3197/1‑140
                                                                                                                                            TTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAA        <  1:336828/140‑1
                                                                                                                                            TTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAA        <  1:484566/140‑1
                                                                                                                                            TTATTGACGTTGAGCCTCGGAACCCGTAACGATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAA        <  2:482004/140‑1
                                                                                                                                            TTATTGACGTCGCCCCTCCGCACCCTTAACACTCCCAACACCTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAA        <  1:178122/140‑1
                                                                                                                                             tgTTGACGTTGAGCCGCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       <  1:598109/138‑1
                                                                                                                                             aATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       <  1:692215/139‑1
                                                                                                                                             TATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAtt       >  2:435971/1‑138
                                                                                                                                             TATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       >  1:103841/1‑140
                                                                                                                                             TATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       >  1:85039/1‑140
                                                                                                                                             TATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       >  1:258772/1‑140
                                                                                                                                             TATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       <  2:608329/140‑1
                                                                                                                                             TATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       <  2:588031/140‑1
                                                                                                                                             TATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       <  1:70721/140‑1
                                                                                                                                             TATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       <  1:580782/140‑1
                                                                                                                                             TATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       >  1:551570/1‑140
                                                                                                                                             TATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGCTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       >  2:528665/1‑140
                                                                                                                                             TATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAACGGTTCTTCTCAACATCAATAAATTTTCTCGGCCTAAAT       >  2:172623/1‑140
                                                                                                                                             TATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACGTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       <  1:316947/140‑1
                                                                                                                                             TATTGACCTTGGGCCGCGTAACCCTTAACAATCCCAAAACTTGTCGAATTGTCGTCTTAATAGCTCACGCTATGCCAACATTCTTCTGCAATTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       <  2:206059/140‑1
                                                                                                                                             TATTCACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       <  2:640508/140‑1
                                                                                                                                             TATTCACCTTCAGTCTCCTAACCCTTAACAATCCCACAACTTGTCGAATGATCGGCTTCATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAT       <  1:499370/140‑1
                                                                                                                                              ATTGACGTTGCGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTTGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATG      <  2:237853/140‑1
                                                                                                                                              ATTGACGTTGAGCCTCGTAACCCTTAACAATCCCAACACTTTTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATG      <  2:461394/140‑1
                                                                                                                                              ATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAAGTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATG      >  1:672723/1‑140
                                                                                                                                              ATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATTACTTTTCTCGGCATAAATG      >  1:524855/1‑140
                                                                                                                                              ATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATG      >  1:270260/1‑140
                                                                                                                                              ATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATG      >  1:505890/1‑140
                                                                                                                                              ATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATG      <  1:290969/140‑1
                                                                                                                                              ATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACACCAACAAATATTCTCGGCATAAATG      >  2:688191/1‑140
                                                                                                                                               cTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTCGTCGAATGGTCGGCTTAATAGCTCATGCTATGCCGACATTCGTCTGCAAGATTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGC     <  2:353876/139‑1
                                                                                                                                               TTGACGTTGGGCCTCGGAACCCGTAACAATCCCAAAACTTGTCGAATGGGCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGC     <  2:565557/140‑1
                                                                                                                                               TTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATCGCCCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAACGGTTCTTCTCAACATCAATAACTTTTCTCGGCATAAATGC     >  1:99807/1‑140
                                                                                                                                               TTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAACTGC     >  2:604688/1‑140
                                                                                                                                               TTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGC     >  1:683814/1‑140
                                                                                                                                               TTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGCCATAAATGC     >  2:44192/1‑140
                                                                                                                                               TTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCCCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGC     <  1:237786/140‑1
                                                                                                                                                TGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGTCTTAATAGCTCTCGTTATACGGTCATGCGTCTGCAAGTTTAGTTAAGGGTTCTTCTTAACATCAATAAATTTTCTCGGCATAAATGCG    >  1:328749/1‑140
                                                                                                                                                TGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCG    <  1:28400/140‑1
                                                                                                                                                TGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCG    <  1:367404/140‑1
                                                                                                                                                 GACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGT   <  2:321533/140‑1
                                                                                                                                                 GACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCAAATTAATCGCGCAATCGGTCACGCTAGTCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGT   >  2:685040/1‑140
                                                                                                                                                  ACGTTGAGCCTCGTAACCCTTAACAATCCCAACACTTGTTGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTC  <  2:79679/140‑1
                                                                                                                                                  ACGTTGAGCCTCGGAACCCTTAACATTCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATATATGCGTC  <  2:292366/140‑1
                                                                                                                                                  ACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTC  <  1:297816/140‑1
                                                                                                                                                  ACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTC  >  1:621287/1‑140
                                                                                                                                                  ACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTC  >  1:501287/1‑140
                                                                                                                                                  ACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTC  >  2:270995/1‑140
                                                                                                                                                  ACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCG                                                                      <  2:234284/72‑1
                                                                                                                                                  ACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGACGGCTGAATAGACAAGGTCAAGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTC  >  1:517048/1‑140
                                                                                                                                                                                                                                                                                              
CACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/1808‑1954
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttattgaCGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTC  <  NC_012417/2064‑1926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.