New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 19541427 (0.930)6 (0.000) 5/242 NT 0.44% intergenic (+187/+139) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
?NC_012417 = 2064 1357 (0.940)intergenic (+297/+29) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1921 total aligned reads displayed.

TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATC  >  NC_012417/1815‑2093
                                                                                                                                           |                                                                                                                                           
tttttttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGA                                                                                                                                             <  2:255704‑M1/140‑1 (MQ=255)
tttttttATTCCTATTGGTGTTGTTGCTTACTTCTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAACAACTAGACGCCGCATTTATGCCGAGAAAATTTATTGA                                                                                                                                             <  2:613835‑M1/140‑1 (MQ=255)
tgtttttatTTCTATTGGTGTTGTTTCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGGCGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGA                                                                                                                                             <  2:478135‑M1/138‑1 (MQ=255)
     ttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATATTg                                                                                                                                        >  1:372806/1‑140 (MQ=255)
      tatttatattgttattgtTGCTTACTTTTTGGTTTTCTATAAAGATTATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTga                                                                                                                                       <  2:603061/134‑1 (MQ=255)
       aTTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTACAATGATGAGGATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                                      >  1:665621/1‑140 (MQ=255)
        tttcTAGTGGTGTTTTTGCTTACTTTTTGTTTTTTTATAAATATTATGCTTTTTACGAGATGGAAGAAAAATATGATTATCATTACGATAATAAAAAATAGATGACGCATTTATGCCGAGAAAATTTATTGATGTTgaga                                                                                                                                     >  2:154938/4‑140 (MQ=255)
        ttCCTAATGGGGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgaga                                                                                                                                     <  1:569944/140‑1 (MQ=255)
         tCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaa                                                                                                                                    <  2:139254/140‑1 (MQ=255)
          ccTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                                   <  1:428340/140‑1 (MQ=255)
           cTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaaga                                                                                                                                  <  1:291202/140‑1 (MQ=255)
            tATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAgaagaa                                                                                                                                 <  1:187206/140‑1 (MQ=255)
             aTTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAAc                                                                                                                                >  2:310625/1‑140 (MQ=255)
                        tgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTAATGTTGAGAAGAACCCTTAACTaaa                                                                                                                     >  2:672118/1‑140 (MQ=255)
                        tcgttAGTTTTGCTTTTTCGATAAAGATGCTGCTTTTGACGTGATGGAAGAAAAATATGATTATCAAGAATATACGATGATTTTGAGCACCGCTGGTGGTCCAGAAAATTTATTGATGTTGAGTTGAACTGTTAACTaaa                                                                                                                     <  2:501075/137‑1 (MQ=255)
                          cTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACt                                                                                                                   >  1:393485/1‑140 (MQ=255)
                           ttACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACtt                                                                                                                  >  2:591118/1‑140 (MQ=255)
                             aCTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAACTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGc                                                                                                                >  2:574990/1‑140 (MQ=255)
                              cTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCa                                                                                                               >  2:551331/1‑140 (MQ=255)
                                 tttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                            <  1:221673‑M1/140‑1 (MQ=255)
                                  ttGTTTTTCTATGAAGATGATGCTGTTGACGAGATGGAAGAAGAATATGATTATCATGAAGATAATAAAAAATAGACGCCGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTATCTAAACTTGCAGACG                                                                                                           <  2:49046‑M1/140‑1 (MQ=255)
                                      ttttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG                                                                                                       >  1:607277‑M1/1‑140 (MQ=255)
                                        ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCTTTTATGCCGAGAAAATTTATTGATGTTGATCAGAACCCTGAACTAAACACGCAGAAGCATGTc                                                                                                     >  2:16743/1‑140 (MQ=255)
                                        ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTc                                                                                                     >  2:381140/1‑140 (MQ=255)
                                        ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTc                                                                                                     >  1:100425/1‑140 (MQ=255)
                                           tataAAGATGATGCTTTTGACGAGAAGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGc                                                                                                  <  2:247319/140‑1 (MQ=255)
                                            ataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTAGCAGACGAATGTAGGCa                                                                                                 >  2:402240/1‑140 (MQ=255)
                                             taAAGATGATGCTTTTGATGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                                <  2:52530/140‑1 (MQ=255)
                                              aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                               <  1:384452/140‑1 (MQ=255)
                                              aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                               >  1:167892/1‑140 (MQ=255)
                                              aaaGATGATGCTTTCGACGAGATGGAAGAAAAAGATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                               <  1:233356/140‑1 (MQ=255)
                                                aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAACCTTGCAGACGAATGTCGGCATAGc                                                                                             <  1:704595/140‑1 (MQ=255)
                                                   tgatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGACGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTg                                                                                          <  1:266811/140‑1 (MQ=255)
                                                    gatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGACTGTCGGCATAGCGTGa                                                                                         >  1:309522/1‑140 (MQ=255)
                                                    gatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGa                                                                                         >  2:7286/1‑140 (MQ=255)
                                                      tgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGc                                                                                       <  1:468034/140‑1 (MQ=255)
                                                        cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                                     >  1:208515/1‑140 (MQ=255)
                                                        cTTATGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                                     <  1:47965/140‑1 (MQ=255)
                                                         ttttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                                    >  1:441560/1‑140 (MQ=255)
                                                          tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAtt                                                                                   >  1:618801/1‑140 (MQ=255)
                                                          tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAtt                                                                                   >  1:404273/1‑140 (MQ=255)
                                                               cGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGcc                                                                              >  2:536594/1‑140 (MQ=255)
                                                               cGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGcc                                                                              <  1:63368/140‑1 (MQ=255)
                                                                gagaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCg                                                                             >  2:650867/1‑140 (MQ=255)
                                                                gagaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCg                                                                             <  1:453294/140‑1 (MQ=255)
                                                                gagaGGGAAGAAAAATATGATTAGAATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCg                                                                             <  2:622808/140‑1 (MQ=255)
                                                                  gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGCGACAATTTCTTGATGTTGCGAAGCACCCCTAACTAAACTTGCAGACGAATCTCGCCATAGCGTGAGCTCTTACGCCgcc                                                                           >  1:12125/1‑138 (MQ=21)
                                                                  gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAc                                                                           >  2:330423/1‑140 (MQ=255)
                                                                  gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAc                                                                           >  1:152917/1‑140 (MQ=255)
                                                                      gaagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACcatt                                                                       >  2:191001‑M2/1‑136 (MQ=255)
                                                                         gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                                    <  1:531832/140‑1 (MQ=255)
                                                                         gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGACGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                                    >  2:366463/1‑140 (MQ=255)
                                                                            aaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACaa                                                                 >  1:350575/1‑140 (MQ=255)
                                                                              atatGCTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                               <  1:197687/140‑1 (MQ=255)
                                                                              atatGATTATCATGAAGATAATAAAAAATAGACGTCGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                               <  1:137319/140‑1 (MQ=255)
                                                                              atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                               <  2:208941/140‑1 (MQ=255)
                                                                                atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                             >  1:329238/1‑140 (MQ=255)
                                                                                atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                             <  2:564264/140‑1 (MQ=255)
                                                                                 tggttattaTGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                            <  2:122797/137‑1 (MQ=255)
                                                                                 tGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                            >  2:183906/1‑140 (MQ=255)
                                                                                  gATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTg                                                           >  1:416712/1‑140 (MQ=255)
                                                                                  gATTAGCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTg                                                           <  2:296811/140‑1 (MQ=255)
                                                                                   aTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGATTggg                                                          >  2:446692/1‑140 (MQ=255)
                                                                                        cATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTACGCCGACCATTCGACAAGATTTGGGATTg                                                     >  1:84671/1‑140 (MQ=255)
                                                                                         aTGAAGATAATAAAAAATAGACGACGCATTTAAGCCGATAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGt                                                    <  1:359155/140‑1 (MQ=255)
                                                                                              gATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAgg                                               <  2:42727/140‑1 (MQ=255)
                                                                                               ataataAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAggg                                              <  1:111301/140‑1 (MQ=255)
                                                                                                 aataaAAAATAGACGACGCATTTATGCCGAGAAAATGTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATCACGTGCGCTCTTAAGCCCAACAATCGACAAGTGTTGGAGTTGTTacgacct                                            >  2:107132/1‑134 (MQ=14)
                                                                                                  ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTc                                           >  1:545068/1‑140 (MQ=255)
                                                                                                  ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTc                                           >  1:301379/1‑140 (MQ=255)
                                                                                                   taaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                                          >  1:556071/1‑140 (MQ=255)
                                                                                                   taaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAGGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                                          <  1:241308/140‑1 (MQ=255)
                                                                                                     aaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGCTTTGGGATTGTTAAGGGTTCCGa                                        >  2:637549/1‑140 (MQ=255)
                                                                                                        aaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGc                                     <  1:588742/140‑1 (MQ=39)
                                                                                                          tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTc                                   >  1:486401/1‑140 (MQ=38)
                                                                                                            gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCaa                                 >  1:692012/1‑140 (MQ=37)
                                                                                                              cgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTCACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACCAGTTTTGGGATTGTTAAGGGTTCCGACGCCCAACg                               >  2:417095/1‑140 (MQ=255)
                                                                                                              cgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACg                               <  2:219710/140‑1 (MQ=33)
                                                                                                              cgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCCTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACg                               <  1:335242/140‑1 (MQ=18)
                                                                                                              cgacgCATTTATGCCGAGAAAATTTATTGATGTTAAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCAGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACg                               >  1:96719/1‑140 (MQ=18)
                                                                                                               gACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGt                              >  2:270995‑M2/1‑139 (MQ=255)
                                                                                                                  gCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGtcaa                           <  2:287874‑M2/140‑5 (MQ=255)
                                                                                                                   cATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGtcaat                          >  1:284347‑M2/1‑135 (MQ=255)
                                                                                                                    aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGtcaata                         <  1:580782‑M2/140‑7 (MQ=255)
                                                                                                                    aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATGAAGCCGATCATTCGACAAGTTGTGGGATTGTTAAGGGTTAGGAGACTGAAGGtgaata                         <  1:499370‑M2/140‑7 (MQ=255)
                                                                                                                     tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGtcaataa                        <  2:85384‑M2/140‑8 (MQ=255)
                                                                                                                      ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGtcaataaa                       <  1:273109‑M2/140‑9 (MQ=255)
                                                                                                                       tattttgagaAAATTTATTGATGTTGAGCAGAACCCTTAACTAAACTTGGAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGCTTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAg                      <  1:521691/134‑1 (MQ=11)
                                                                                                                        aTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGc                     <  1:674554/140‑1 (MQ=33)
                                                                                                                                     ttATTGAcgttgagcctcggaacccttaacaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaa        <  1:509288‑M1/140‑134 (MQ=255)
                                                                                                                                     ttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGaataaat        <  1:647862/140‑1 (MQ=11)
                                                                                                                                      tATTGAcgttgagcctcggaacccttaacaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaat       >  1:258772‑M1/1‑6 (MQ=255)
                                                                                                                                      tATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGaataaata       <  2:514341/140‑1 (MQ=31)
                                                                                                                                      caTTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGaataaata       <  2:342401/139‑1 (MQ=14)
                                                                                                                                       aTTGAcgttgagcctcgtaacccttaacaatcccaacacttttcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaatg      <  2:461394‑M1/140‑136 (MQ=255)
                                                                                                                                       aTTGAcgttgagcctcggaacccttaacaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacaccaacaaatattctcggcataaatg      >  2:688191‑M1/1‑5 (MQ=255)
                                                                                                                                       aTTGAcgttgagcctcggaaaccttaacaatcccaaaacttgtcgactggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggatcttctcaccatcaatacatttcctcggcatacatg      >  1:318099‑M1/1‑5 (MQ=255)
                                                                                                                                        ttGAcgttgagcctcggaacccttaacaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcatcaatgc     >  2:43890‑M1/1‑4 (MQ=255)
                                                                                                                                        ttGAcgttgagcctcggaacccttaacaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaatgc     >  1:683814‑M1/1‑4 (MQ=255)
                                                                                                                                           acgttgagcctcggaacccttaacaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccg                                                                      <  2:234284‑M1/72‑72 (MQ=255)
                                                                                                                                           |                                                                                                                                           
TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATC  >  NC_012417/1815‑2093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.