New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 3077330 (0.330)5 (0.010) 3/246 NT 2.2% intergenic (‑403/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 3108 132 (0.140)intergenic (‑434/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 120 total aligned reads displayed.

TTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2931‑3077
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cc‑ccagtATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATATAG  <  NC_012417/3108‑2969
                                                                                                                                                                                                                                                                                                
tgtAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAC                                                                                                                                                     <  2:698626/138‑1
TTGAAACGAGTGTTAACGATTTTCTTCTTGGTGTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAC                                                                                                                                                     <  2:577371/141‑1
TTGAAACGAGTGTGAACGAGTTTCTTTTTGTCTTGATACTATATTTAAATAACTCGATTTTATATATATAGCTGTAACTGTTAATAGTACAGTGTTTAAACATCTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAC                                                                                                                                                     <  2:688616/141‑1
TTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTTATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAATGGAAAATTTGACAATAAATAAC                                                                                                                                                     >  2:617705/1‑141
TTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAC                                                                                                                                                     <  1:665981/141‑1
TTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAC                                                                                                                                                     >  2:31864/1‑141
 gGAAACGAGTGTGAACGAGTTTGTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC                                                                                                                                                    <  2:295410/140‑1
 TGAAACGAGTGTGTACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC                                                                                                                                                    <  1:36496/141‑1
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGTTTTTATATATATAGCTGTATCTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC                                                                                                                                                    <  1:210373/141‑1
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTTAAATGAAAATTTGACAATAAAAAACC                                                                                                                                                    >  2:564171/1‑141
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGCAAATTTGACAATAAAAAACC                                                                                                                                                    >  2:437382/1‑141
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAACATTTGACAATAAAAAACC                                                                                                                                                    >  2:629716/1‑141
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAACTTTGACAATACAAAACC                                                                                                                                                    >  1:518031/1‑141
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGTCAATAAAAAACC                                                                                                                                                    >  1:648002/1‑141
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC                                                                                                                                                    >  1:47746/1‑141
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC                                                                                                                                                    >  2:561163/1‑141
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC                                                                                                                                                    <  1:545654/141‑1
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC                                                                                                                                                    >  1:739688/1‑141
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC                                                                                                                                                    <  2:115236/141‑1
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC                                                                                                                                                    >  2:241834/1‑141
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC                                                                                                                                                    >  1:166733/1‑141
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC                                                                                                                                                    <  2:182334/141‑1
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC                                                                                                                                                    <  1:177738/141‑1
 TGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAAATGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC                                                                                                                                                    >  1:496287/1‑141
  taaaatAGTGTTAACGAGTTTCTTATTGTCATGATATTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑C                                                                                                                                                  <  2:122473/135‑1
  GAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATCTAGCTGTAACTGTTGATATTCCAGTGTTTAAACGTGCTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑C                                                                                                                                                  >  2:130347/1‑141
  GAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACATTAAAAAACtc                                                                                                                                                   >  2:466345/1‑139
  GAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATCAAAAACC‑C                                                                                                                                                  >  1:299261/1‑141
  GAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑C                                                                                                                                                  >  1:215054/1‑141
  GAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑C                                                                                                                                                  >  1:9432/1‑141
  GAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑C                                                                                                                                                  <  1:139112/141‑1
   AAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CC                                                                                                                                                 <  1:258083/141‑1
   AAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CC                                                                                                                                                 <  1:346473/141‑1
    AACGAGTGTGAACGAGTTTCTTCTTGTCTTGCAAATCAATATAATGTTCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CCA                                                                                                                                                <  1:140816/141‑1
    AACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CCA                                                                                                                                                >  2:241981/1‑141
    AACGAGTGTGAACGAGTTTCTTCCAGCCTTCACGCGATATAGAAATAACTCGATTTTATATATATAGCGGTAACTGTTGATATTACAGTGTTTAAACGTGTTTGTGTGCGTGAAAGTAAAATTTGACAATAAAAAACacaa                                                                                                                                                 >  2:540287/1‑137
     atGAGTGTGAACGAGTTTCTTCTTATCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CCAG                                                                                                                                               <  2:260418/139‑1
     ACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CCAG                                                                                                                                               <  2:711745/141‑1
     ACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATCTGACAATAAAAAACC‑CCAG                                                                                                                                               >  1:421845/1‑141
      aGAGTGTGAACAAGTTTCTTTATGTTTAGATACTATAGAGAAATAACTAGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CCAGT                                                                                                                                              <  2:62550/140‑1
      aGAGAGTTAAAGAGTTTATTGTTGTGTTGATACTATAGAGAAATAACTGGATTTTATATATATAGATGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CCAGT                                                                                                                                              <  2:707852/140‑1
      CGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CCAGT                                                                                                                                              <  1:408052/141‑1
      CGAGTGTGAACGAGTTTCTTCTTGTCATGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CCAGT                                                                                                                                              <  2:325925/141‑1
      CGAGTGTGAAACAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CCAGT                                                                                                                                              <  1:93396/141‑1
                                   ATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CCAGTATTATTTAAGATTCGACACCTTAATAATA                                                                                                                 <  1:16429/141‑1
                                                                                          AGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAA                                                          <  1:673254/141‑1
                                                                                                                                      AAAGAACC‑CAAGTATGAATTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTT              <  2:648829/141‑1
                                                                                                                                      AAAGAACA‑CCAGGATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATAGAGTT              <  2:233583/141‑1
                                                                                                                                      AAAAAACCACCAGTATTATTTAAGATTCGACAACTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGT               <  2:179344/141‑1
                                                                                                                                         tatCC‑CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGGTCTCTAATACCTGTTGTTCTTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATT           <  1:175252/138‑1
                                                                                                                                            ccgCCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTC         <  2:586935/138‑1
                                                                                                                                            CC‑CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCGCGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCT        >  1:542800/1‑141
                                                                                                                                            CC‑CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTCTATATATAAAATCGAGTTATTTCT        >  2:441005/1‑141
                                                                                                                                            CC‑CCAGTATTATTTAAGAATCGATACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCT        <  2:246500/141‑1
                                                                                                                                             C‑CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACTCTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTTTTTCTA       >  2:77306/1‑141
                                                                                                                                             C‑CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCATCAGTTACAGCTATATATATAAAATCGAGTTATTTCTA       <  2:253503/141‑1
                                                                                                                                             C‑CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATCTATAAAATCGAGTTATTTatt       >  1:420292/1‑138
                                                                                                                                             C‑CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTt       >  2:680403/1‑140
                                                                                                                                             C‑CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTA       <  2:315539/141‑1
                                                                                                                                             C‑CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTA       <  2:658422/141‑1
                                                                                                                                             C‑CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTA       <  1:565005/141‑1
                                                                                                                                             C‑CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTA       <  1:665660/141‑1
                                                                                                                                             C‑CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTA       <  1:4225/141‑1
                                                                                                                                             C‑CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTA       <  2:550136/141‑1
                                                                                                                                             C‑CCAGTATTATTTAAGATCCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTA       <  1:310156/141‑1
                                                                                                                                              gcgAGTACTATTTGAGATTCGGCAGCTTAATGATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACTCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTA       <  2:720916/138‑1
                                                                                                                                              ctCAGTATTAGTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTA       <  1:616590/139‑1
                                                                                                                                               CCAGTGTGATTTAAGATGCGACAACTGAAGAATATAAATGGGGTTTTTTATTGTCAAATTTTCAAATAACACACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTAT      <  2:88167/141‑1
                                                                                                                                               CCAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTAT      >  1:498046/1‑141
                                                                                                                                               CCAGTATTATTTAAGATTCGACACCTCAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTAATTTTTAT      >  2:426699/1‑141
                                                                                                                                                aAGTATTATTTAATATTCTACAACTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTGTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATA     <  2:212605/140‑1
                                                                                                                                                CAGTATTATTTAAGATTCTACAACTTAATAATATAACTGGGGGCTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATCTATAAAATCGAGTTATTTCTATA     <  1:566996/141‑1
                                                                                                                                                CAGTATTATTTAAGATTCGACACCTTAATAATGTAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACGAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATA     >  2:664451/1‑141
                                                                                                                                                CAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATA     >  1:497460/1‑141
                                                                                                                                                CAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATA     >  1:121740/1‑141
                                                                                                                                                CAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATA     >  1:130076/1‑141
                                                                                                                                                CAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATA     <  1:371460/141‑1
                                                                                                                                                CAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATA     <  1:642678/141‑1
                                                                                                                                                CAGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATA     >  1:725558/1‑141
                                                                                                                                                 AGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCTAGTTATTTCTCTAT    >  1:83369/1‑141
                                                                                                                                                 AGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATAT    <  1:630170/141‑1
                                                                                                                                                 AGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATAT    >  1:408541/1‑141
                                                                                                                                                 AGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATAT    >  1:727021/1‑141
                                                                                                                                                 AGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGATATTGCTATAT    >  1:3084/1‑141
                                                                                                                                                 AGTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCAAAATGGAGTCCAAAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATAT    >  1:354637/1‑141
                                                                                                                                                  GTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTCTATA   >  1:220152/1‑141
                                                                                                                                                  GTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATATA   <  2:55009/141‑1
                                                                                                                                                  GTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATATA   >  1:167945/1‑141
                                                                                                                                                  GTATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATATA   <  1:195291/141‑1
                                                                                                                                                   TATTATTTAAGATTCGACATCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATATAG  <  2:560186/141‑1
                                                                                                                                                   TATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCTAATTTTCCTTTTACGCACAAAAACACGTTTAAACATTTTACTATCAACAGTTACATCTATATATATACATTTGAGTTATTTCTATATAt  >  2:254661/1‑140
                                                                                                                                                   TATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTTTAATATCAACAGTTAAACCTATATATATAAACTCGATTTATTTCTCTATAt  >  2:392637/1‑140
                                                                                                                                                   TATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTACTCTGAACATCTACAGCTATATATATAAAATCGAGTTATTTCTATATAG  >  1:321250/1‑141
                                                                                                                                                   TATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATATAG  <  2:606017/141‑1
                                                                                                                                                   TATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATATAG  >  1:220546/1‑141
                                                                                                                                                   TATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATATAG  <  1:579250/141‑1
                                                                                                                                                   TATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATATAG  >  1:82031/1‑141
                                                                                                                                                   TATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATATAG  <  1:635071/141‑1
                                                                                                                                                   TATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATATAG  >  1:121515/1‑141
                                                                                                                                                   TATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTGTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAGACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATATAG  >  1:379277/1‑141
                                                                                                                                                                                                                                                                                                
TTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC‑CCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2931‑3077
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cc‑ccagtATTATTTAAGATTCGACACCTTAATAATATAACTGGGGTTTTTTATTGTCAAATTTTCCTTTCACGCACAAAAACACGTTTAAACACTGTAATATCAACAGTTACAGCTATATATATAAAATCGAGTTATTTCTATATAG  <  NC_012417/3108‑2969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.