New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 3077330 (0.330)5 (0.010) 3/246 NT 2.2% intergenic (‑403/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 3108 132 (0.140)intergenic (‑434/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1041 total aligned reads displayed.

ACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2968‑3125
                                                                                                                                            |                                                                                                                                          
 cTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTCTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAACAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATa                                                                                                                                           >  1:379277‑M2/1‑140 (MQ=255)
 atatatagAAATAACTCAAATGTATATATATAGATGTAACTGTTGATAGTAAAATGTTTAAACGTGTTTTTGTGCGTAAAAGGAAAATTAGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATa                                                                                                                                           >  2:254661‑M2/2‑140 (MQ=255)
    tataGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATactg                                                                                                                                        <  1:642678‑M2/141‑5 (MQ=255)
    tataGAAATAACTCGATTTTATAGATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAGCCCCCAGTTATATTATTAAGTTGTAGAATCTTAAATAATactg                                                                                                                                        <  1:566996‑M2/141‑5 (MQ=255)
     ataGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATactgg                                                                                                                                       >  1:498046‑M2/1‑136 (MQ=255)
     ataGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATactgg                                                                                                                                       >  1:529806‑M2/1‑136 (MQ=255)
      taGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATGTTACAGTGTTTAAACGTTTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATCCtcag                                                                                                                                      >  1:359084/1‑138 (MQ=255)
      taGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATactggg                                                                                                                                      <  2:658422‑M2/141‑7 (MQ=255)
      taGAAAAAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGAGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATactggg                                                                                                                                      >  2:77306‑M2/1‑135 (MQ=255)
          aaTAACTCGATTTTATATATATAGTTGTAAAAGTTAATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTc                                                                                                                                  <  2:727090/141‑1 (MQ=255)
          aaTAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTc                                                                                                                                  <  2:608133/141‑1 (MQ=255)
          aaTAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAAGAACAACAGGTATTAGAGACCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATactggggata                                                                                                                                  <  1:175252‑M2/141‑11 (MQ=255)
          aaTAACTCGATTTTATATATAGAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTc                                                                                                                                  <  1:511502/141‑1 (MQ=255)
           aTAACTCGATTTTATATAGATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCt                                                                                                                                 <  1:249945/141‑1 (MQ=255)
            aaaCTCGATTTTATATATATAGCTGTAACTGGTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCTCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtt                                                                                                                                <  2:528517/140‑1 (MQ=255)
              aCTCTATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt                                                                                                                              <  1:664008/141‑1 (MQ=255)
              aCTCGATTTTATATATATGGCTGTAACTGTGGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATGTTAAATAATACTGGGGGTCtttt                                                                                                                              >  1:754902/1‑141 (MQ=255)
              aCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAATTAGGTTATTATGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt                                                                                                                              <  2:649707/141‑1 (MQ=255)
              aCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt                                                                                                                              <  1:291325/141‑1 (MQ=255)
              aCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTAGGGGTCtttt                                                                                                                              >  2:213486/1‑141 (MQ=255)
              aCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAAGAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt                                                                                                                              <  1:213493/141‑1 (MQ=255)
               cTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttt                                                                                                                             >  1:115775/1‑141 (MQ=255)
               cTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttt                                                                                                                             <  2:55834/141‑1 (MQ=255)
               cTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttt                                                                                                                             >  1:102413/1‑141 (MQ=255)
               cTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttt                                                                                                                             >  2:713914/1‑141 (MQ=255)
               atCGATGATATATATATAGCATTAATAGTTGATATAAAAGTGTTTAAAAGTGTTTTTGTGCGTGAAAAGAAAAAAAAAAAAAAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttt                                                                                                                             <  2:4490/140‑1 (MQ=255)
                   aTTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATat                                                                                                                         >  1:3668‑M2/1‑139 (MQ=255)
                     ttgATAAATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgc                                                                                                                       >  2:200707‑M2/1‑137 (MQ=255)
                      ttATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgaa                                                                                                                      <  1:684461‑M2/141‑6 (MQ=255)
                        atatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATATTAAATAATACTGGGGGTCTTTTTATatgcaat                                                                                                                    <  2:228231‑M2/141‑8 (MQ=255)
                           tatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatata                                                                                                                 <  2:116279‑M2/141‑11 (MQ=255)
                            atataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataa                                                                                                                >  2:382502‑M2/1‑130 (MQ=255)
                             tataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATCATCCTGGGTGCCTTTCTATatgcaatagaat                                                                                                               <  1:349981‑M2/141‑13 (MQ=255)
                              ttagCTGTACCTGTTCGTATTACAGTGTTTAATCGTGTTTGTGTGCGTGAAAGGAAAATTTGACAATAAGAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataata                                                                                                              >  1:401226‑M2/2‑128 (MQ=255)
                               aagGTGTAACTGAAGATATTACAGTATTTAAAAGTGTATTTGTGAGTAAAAGTAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatac                                                                                                             >  2:545977‑M2/2‑127 (MQ=255)
                                aGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTCAATAATACTGGGGGTCTTTTTATatgcaatataatact                                                                                                            >  1:457677‑M2/1‑126 (MQ=255)
                                   tGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactact                                                                                                         <  1:302523‑M2/141‑19 (MQ=255)
                                   tGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactact                                                                                                         <  1:98894‑M2/141‑19 (MQ=255)
                                     tAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactag                                                                                                       <  2:156600‑M2/141‑21 (MQ=255)
                                     tAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactac                                                                                                       <  1:556892‑M2/141‑21 (MQ=255)
                                      aaCTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGATGTTTAAACatgcaatatttttctactaga                                                                                                      <  1:581524‑M2/141‑22 (MQ=255)
                                       aCTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaa                                                                                                     <  1:281210‑M2/141‑23 (MQ=255)
                                       aCTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaa                                                                                                     <  2:177443‑M2/141‑23 (MQ=255)
                                        cTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaag                                                                                                    <  2:366769‑M2/141‑24 (MQ=255)
                                          gTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagta                                                                                                  <  1:445069‑M2/141‑26 (MQ=255)
                                                  tACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTTGGGGCTTTTTTATatgaaatataatactactataaatataaccaaa                                                                                          <  2:637940‑M2/141‑34 (MQ=255)
                                                         tttAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacact                                                                                   <  1:673254‑M2/141‑58 (MQ=255)
                                                         tttAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaag                                                                                   >  1:149192‑M2/1‑101 (MQ=255)
                                                         tttAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaag                                                                                   >  1:731160‑M2/1‑101 (MQ=255)
                                                           tAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagat                                                                                 <  2:474190‑M2/141‑43 (MQ=255)
                                                           tAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaaaat                                                                                 <  2:584320‑M2/141‑43 (MQ=255)
                                                            aaaCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGTGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagata                                                                                >  2:145692‑M2/1‑98 (MQ=255)
                                                            aaaCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagata                                                                                <  2:482561‑M2/141‑44 (MQ=255)
                                                               cGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCGCGTTATATTATTAAGGTGTGGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagcataaccgaacatcaagacaaaa                                                                             <  2:272307‑M2/141‑47 (MQ=255)
                                                                gtgtTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataa                                                                            <  1:595420‑M2/141‑48 (MQ=255)
                                                                 gggttttgtgCGTGAAAAGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaa                                                                           >  2:590013‑M2/4‑93 (MQ=255)
                                                                  gtTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaa                                                                          <  2:411603‑M2/141‑50 (MQ=255)
                                                                   tttttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaac                                                                         <  1:257658‑M2/141‑51 (MQ=255)
                                                                   tttttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTACACTATGATGTTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaac                                                                         >  2:340014‑M2/1‑91 (MQ=255)
                                                                     tttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgt                                                                       >  2:702605‑M2/1‑89 (MQ=255)
                                                                      ttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgtt                                                                      <  1:607215‑M2/141‑54 (MQ=255)
                                                                      ttGTGCGTGAAAAGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGTTGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgtt                                                                      >  2:458101‑M2/1‑88 (MQ=255)
                                                                       tgtgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaatttaagataataaaacgtta                                                                     <  2:129668‑M2/141‑55 (MQ=255)
                                                                                 aGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatga                                                           >  1:709100‑M2/1‑77 (MQ=255)
                                                                                     aaaTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgatcttcaaaataataaaatgttaaaataaaagacgaa                                                       <  1:429642‑M2/141‑69 (MQ=255)
                                                                                     aaaTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaa                                                       <  1:649917‑M2/141‑69 (MQ=255)
                                                                                      aaTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactcctagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaa                                                      <  1:277135‑M2/141‑70 (MQ=255)
                                                                                           gACAATAAAAAACCCCAGTTATATTATAAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagataaaacgaaaagtgg                                                 <  2:670935‑M2/141‑75 (MQ=255)
                                                                                            aCAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatgtgacgaaaagtggg                                                <  1:3881‑M2/141‑76 (MQ=255)
                                                                                             aaatAAAAAACACCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtggga                                               >  2:74473‑M2/2‑65 (MQ=255)
                                                                                              aaTAAAAAACCCCAGTTGTATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaa                                              >  2:686440‑M2/1‑64 (MQ=255)
                                                                                              aaTAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaa                                              >  2:184324‑M2/1‑64 (MQ=255)
                                                                                                tAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaac                                            >  1:332832‑M2/1‑62 (MQ=255)
                                                                                                 aaaaaaCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaaca                                           >  1:242961‑M2/1‑61 (MQ=255)
                                                                                                       ccccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGAGGTCTTTTTATatgcaatagaatactactagaagaataaccgaaaacaaaaaaaataaaacgttaaaaaatattacgaaatatgggaaacaaccacc                                     <  2:244592‑M2/141‑87 (MQ=255)
                                                                                                          caatgatattattaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtacaaccgaaaatcaagataataaaacgttaacagatatgacgaaaagtgggaaacaacgcccatg                                  >  1:540287‑M2/6‑52 (MQ=255)
                                                                                                          cAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgtaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatg                                  >  1:130347‑M2/1‑52 (MQ=255)
                                                                                                          cAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatg                                  <  1:693397‑M2/141‑90 (MQ=255)
                                                                                                             gtatatTATTAAGGTGTAGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggag                               >  2:32604‑M2/2‑49 (MQ=255)
                                                                                                               atatTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagag                             >  1:629716‑M2/1‑47 (MQ=255)
                                                                                                                 attattAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactaccagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaa                           >  1:419344‑M2/1‑45 (MQ=255)
                                                                                                                    attaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaaagttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaaa                        <  2:620462‑M2/141‑100 (MQ=255)
                                                                                                                     ttaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaaaataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcacatgaagagaagaga                       <  2:497042‑M2/141‑101 (MQ=255)
                                                                                                                     ttaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaaaaaagataataaaacgttaaaagatatgacgaaaagtgggatacaacgcgcatggagagaaaaga                       <  1:722565‑M2/141‑101 (MQ=255)
                                                                                                                        aGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaa                    <  1:193105‑M2/141‑104 (MQ=255)
                                                                                                                            gtCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaataga                <  1:164676‑M2/141‑108 (MQ=255)
                                                                                                                            gtCGAATCTTAAATAATACTGGGGGTCTTTTTATatgaaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaataga                >  2:511253‑M2/1‑34 (MQ=255)
                                                                                                                             gcgAATATAAAAGAATAATGAGAGTTTTTTTATatgcaatataagacaaatagaagtataaaagaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagat               >  2:299261‑M2/2‑33 (MQ=255)
                                                                                                                                aaTCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataat            <  2:354575‑M2/141‑112 (MQ=255)
                                                                                                                                aaTCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataat            >  1:316249‑M2/1‑30 (MQ=255)
                                                                                                                                 aTCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatg           <  1:476533‑M2/141‑113 (MQ=255)
                                                                                                                                 aTCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatg           <  2:392663‑M2/141‑113 (MQ=255)
                                                                                                                                  tCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggggagaaaagaaaatagataatgt          <  1:183516‑M2/141‑114 (MQ=255)
                                                                                                                                   cTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgta         <  2:314928‑M2/141‑115 (MQ=255)
                                                                                                                                      aaaTAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagcgaaacgaaaacagataaagtaagc      <  2:434‑M2/141‑118 (MQ=255)
                                                                                                                                       aataatACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagct     >  1:228231‑M2/1‑23 (MQ=255)
                                                                                                                                        ataataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataatcaaaagcttaataagttgacgaacagtgggaaaaaacgcccatggagagaaaagaaaatagataatgtaagcta    <  1:747320‑M2/141‑120 (MQ=255)
                                                                                                                                        ataataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagcta    <  1:85762‑M2/141‑120 (MQ=255)
                                                                                                                                        ataataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagcta    <  2:360040‑M2/141‑120 (MQ=255)
                                                                                                                                          aataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatg  >  2:287100‑M2/1‑20 (MQ=255)
                                                                                                                                            |                                                                                                                                          
ACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2968‑3125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.