New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 2937995 (0.980)3 (0.000) 3/250 NT 0.33% intergenic (‑263/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 2949 844 (0.870)intergenic (‑275/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1221 total aligned reads displayed.

ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGT  >  NC_012417/2797‑3077
                                                                                                                                            |                                                                                                                                            
  ttttaattttGTTAATTCGAGTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTATTAGTGATGCGTTAGTATTCAGATGAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGa                                                                                                                                            <  2:536479/141‑1 (MQ=255)
   tttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                           <  2:371705/141‑1 (MQ=255)
           tGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                                                                   <  1:699362/141‑1 (MQ=255)
           tGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                                                                   <  2:71559/141‑1 (MQ=255)
           tGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                                                                   <  1:596043/141‑1 (MQ=255)
                aTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGACAGTAGTATTGATTTATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                              >  1:585739‑M2/1‑137 (MQ=255)
                aTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                              >  1:542646‑M2/1‑137 (MQ=255)
                aTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                              >  2:744835‑M2/1‑137 (MQ=255)
                 ttCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgtttc                                                                                                                             >  2:314102‑M2/1‑136 (MQ=255)
                    gATTTTATTTTATAATCCTTTTGCTTTTTAAAAAAAGTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  1:137404/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  1:441980/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  2:5270/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  1:680515/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACGTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  2:249526/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGAATTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  2:455107/141‑1 (MQ=255)
                      ttttattttaTAATTCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                        <  1:204237/141‑1 (MQ=255)
                      ttttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                        <  2:584226/141‑1 (MQ=255)
                       tttatttaATAATCCTGTTGACAGTATAGAAAGTGTTATGGATGCATTGGTTGTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  1:249767/141‑1 (MQ=38)
                       tttATTTGTTAATCCTTTTGACTTTTTAGATAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGAGTCTTTCCCCGTCACAATTATAGTTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:734582/141‑1 (MQ=25)
                       tttATTTGATGATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:183644/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTTACTTTTTAGAAAGTTTTATTTATTCATTTGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:25880/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAACAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTCAACGAGTTTCTtcttg                                                                                                                       <  1:726350/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:301009/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:15835/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  1:167992/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTCACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  1:420927/141‑1 (MQ=255)
                        ttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                                                                      <  1:570671/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:556798/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:196345/141‑1 (MQ=255)
                         tATTTGATAATCCTTGTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:71387/141‑1 (MQ=255)
                          aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                    <  2:75988/141‑1 (MQ=255)
                          aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                    <  1:614090/141‑1 (MQ=255)
                          aTTGGATAATACTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTCCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                    <  1:149969/141‑1 (MQ=255)
                           tttGATCATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtctt                                                                                                                   <  1:276829/141‑1 (MQ=255)
                           tttGATAATCCTTTTGACTTTTTAGAAATTTTTATTTATTCATTGTTTTTCACATTAATTTATTTAGTTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtctt                                                                                                                   <  2:171299/141‑1 (MQ=255)
                           tttGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTATTTGAAACGAGAGTGAACGAGCTTCTtattgtatt                                                                                                                   >  2:658435/1‑141 (MQ=255)
                             tGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTAACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGa                                                                                                                 >  2:213493/1‑141 (MQ=255)
                                     cTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtatat                                                                                                         <  2:226959/141‑1 (MQ=255)
                                        ttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGa                                                                                                      <  1:331928/141‑1 (MQ=255)
                                         tGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaa                                                                                                     <  1:91211/141‑1 (MQ=255)
                                          gACTTTTTAGAAATTTTTATTTATTCATTGATTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAAGAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaaa                                                                                                    <  2:34520/141‑1 (MQ=255)
                                            gtttttAGAAATTTTTATTTATTCATTGGTTTTTACATTAATTTAGTTAGGTTTATAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATa                                                                                                  <  2:552700/140‑1 (MQ=255)
                                              ttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                <  2:569414/141‑1 (MQ=255)
                                              tttaAGAAAGTTTTATTTATTCATTGGTTTTAACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                <  2:106563/141‑1 (MQ=255)
                                                 tAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCg                                                                                             <  2:560362/141‑1 (MQ=255)
                                                    aaaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGttt                                                                                          >  1:654434/1‑141 (MQ=255)
                                                      agatttatataTTTATTGATTTACAGATTAATTTAGTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtttt                                                                                        <  2:400595/138‑1 (MQ=38)
                                                      aGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtttt                                                                                        >  1:340014/1‑141 (MQ=255)
                                                      aGTTTTATTTATTCATTGGTTTTCACATTAATGTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCGTGATACTATATAGAAATAACTCGAtttt                                                                                        >  2:670651/1‑141 (MQ=255)
                                                            atttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtatatat                                                                                  >  2:605459/1‑141 (MQ=255)
                                                                  tCATTGGTTTTCAAATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCt                                                                            <  2:382947/141‑1 (MQ=255)
                                                                    aTTGGTTTCCTGCTTAATTGATGTAGGTTTAGAGGGTTAGAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGt                                                                          <  1:101113/141‑1 (MQ=38)
                                                                      tGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTTATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATTTAGCTGTaa                                                                        >  2:481343/1‑141 (MQ=255)
                                                                       ggTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAAc                                                                       <  1:628953/141‑1 (MQ=255)
                                                                       ggTTTTAACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAAc                                                                       <  2:67725/141‑1 (MQ=255)
                                                                         ttttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTg                                                                     >  1:665794/1‑141 (MQ=255)
                                                                          tttAACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGACTCTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATCACTGGATTTTATATATATAGATGTaaattt                                                                    >  2:358791/1‑137 (MQ=38)
                                                                              acaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGat                                                                >  2:9037/1‑141 (MQ=255)
                                                                              acaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGat                                                                >  1:396950/1‑141 (MQ=255)
                                                                                    atgtatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACa                                                          <  1:379531/138‑1 (MQ=255)
                                                                                     tttatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAg                                                         <  1:641660/141‑1 (MQ=255)
                                                                                         tttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGtt                                                     >  1:118293/1‑141 (MQ=255)
                                                                                          ttaAGTTTATAGTGTCAGAAACAGAAAAATGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGATTCGTCTTGTCTTGATACTATATAGAAATAACTCGATGTTATATATATAGCTGTAACTGTTGATATTACAGTGttt                                                    <  2:199213/141‑1 (MQ=38)
                                                                                           tatgtgtAGAGGGTCATGAAAATAAGAAGGAATAGGATGATGTGTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTa                                                   <  2:693229/135‑1 (MQ=38)
                                                                                              gTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAAc                                                <  1:156116/141‑1 (MQ=255)
                                                                                                 aagagTGTCATAAAAAGAAGAATGAATAGGTTGTTTTTTAAAACGAATGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTTTTGATATTACAGTGTTTAAACgtg                                             <  2:290135/140‑1 (MQ=39)
                                                                                                     gggACATAAAAAGAAGAAGGAATAGGTTTTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGTAATAACTCGATTGTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtttt                                         <  2:500270/141‑1 (MQ=255)
                                                                                                       gTCATAAAAAGAAGAAGTAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                       <  1:741583/141‑1 (MQ=255)
                                                                                                       gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                       <  1:5143/141‑1 (MQ=255)
                                                                                                       gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                       <  1:240842/141‑1 (MQ=255)
                                                                                                        tCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGTTATTACAGTGTTTAAACGTGTTTTtgt                                      >  1:124302/1‑141 (MQ=255)
                                                                                                           tAAAAAGAAGAAGGAATAGGTTGTTTTTTTTTTTTTTTTTGAACGAGTTTCTTGTTGTCTTGATACTATATAGTGATAATTCGATTTTATATATATATCTGTAACTGTTGATATTACAGTGTTTAAAGGTGTTTTtgtgtt                                   >  2:638870/1‑139 (MQ=255)
                                                                                                               aagaagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGaa                               >  1:451382/1‑141 (MQ=255)
                                                                                                                  aagaagGAATATGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                            <  2:2752/141‑1 (MQ=255)
                                                                                                                  aagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                            <  1:487378/141‑1 (MQ=255)
                                                                                                                     aagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGaaa                         >  2:238334/1‑141 (MQ=255)
                                                                                                                        gAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAAtt                      >  1:303697/1‑141 (MQ=255)
                                                                                                                               ttgttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGTTATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAAt               >  2:473153/1‑141 (MQ=255)
                                                                                                                                  ttttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaa            <  2:422895/141‑1 (MQ=255)
                                                                                                                                  ttttttGAAACGAGTGTGAACGAGTGTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaa            <  1:534122/141‑1 (MQ=255)
                                                                                                                                  ttttttGAAACGAGTGTGAACGAGTATCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaa            <  1:473299/141‑1 (MQ=255)
                                                                                                                                   tttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaa           <  1:502830/141‑1 (MQ=255)
                                                                                                                                   tttttGAAAATAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaa           <  2:512383/141‑1 (MQ=255)
                                                                                                                                    ttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaaa          <  1:825/141‑1 (MQ=255)
                                                                                                                                     tttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATACCTCCCATCTAGCCTTACAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaaaa         <  1:354936/141‑1 (MQ=37)
                                                                                                                                     tttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATAATATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaaaa         <  2:437838/141‑1 (MQ=255)
                                                                                                                                      ttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTTATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAATGGAAAATTTGACAATAAATAAC        >  2:617705‑M1/1‑141 (MQ=255)
                                                                                                                                      ttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAC        <  1:183809‑M1/141‑1 (MQ=255)
                                                                                                                                       tGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACC       <  2:115236‑M1/141‑1 (MQ=255)
                                                                                                                                        gAAACtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaa      >  2:327065‑M1/1‑5 (MQ=255)
                                                                                                                                        gAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATCTAGCTGTAACTGTTGATATTCCAGTGTTTAAACGTGCTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCC      >  2:130347‑M1/1‑141 (MQ=255)
                                                                                                                                        gAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAATCGTGTTTTTGTGCGTGAAAGGAAAATTTGATAATAAAAAACtt      >  1:225127‑M1/1‑139 (MQ=255)
                                                                                                                                        gAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCC      >  1:215054‑M1/1‑141 (MQ=255)
                                                                                                                                        gAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTGTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCC      <  2:705779‑M1/141‑1 (MQ=255)
                                                                                                                                         aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaatacaatcgaat     >  2:412364‑M1/1‑4 (MQ=255)
                                                                                                                                         aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaat     >  1:369924‑M1/1‑4 (MQ=255)
                                                                                                                                         aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaat     >  2:145701‑M1/1‑4 (MQ=255)
                                                                                                                                         aaaCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCC     <  1:258083‑M1/141‑1 (MQ=255)
                                                                                                                                           aCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAG   >  1:45931‑M1/1‑141 (MQ=255)
                                                                                                                                            ctcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgcccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatctaattag  >  1:291015‑M1/1‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGT  >  NC_012417/2797‑3077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.