BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 2937	995 (0.980)	3 (0.000)	3/250	NT	0.33%	intergenic (‑263/–)	USA300HOU_RS14900/–	hypothetical protein/–
*	?	NC_012417	= 2949	844 (0.870)	3 (0.000)	3/250	NT	0.33%	intergenic (‑275/–)	USA300HOU_RS14900/–	hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1111 total aligned reads displayed.

GTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAG  >  NC_012417/2809‑3089

gTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGa                                                                                                                                              >  1:218791/1‑141 (MQ=255)

 ttAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAg                                                                                                                                             >  2:558275‑M2/1‑140 (MQ=255)

   aaTTCGATTTTAGTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgtt                                                                                                                                           >  1:51139‑M2/1‑138 (MQ=255)

    aTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                                          >  1:591225‑M2/1‑137 (MQ=255)

      tCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                                                                                        <  1:484198/141‑1 (MQ=255)

      tCGATTTCATTTGATAATCCTTTTTACTTGTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GGTGAGAGGGGCATAAAAATAAGAAGGAATAGGTTGGTTGTTGAAACGAGTGTGAACGAGTttct                                                                                                                                        <  1:377169/141‑1 (MQ=255)

       ctaTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTTGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttctt                                                                                                                                       <  2:288575/139‑1 (MQ=255)

       cGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttctt                                                                                                                                       <  1:268572/141‑1 (MQ=255)

        tattttattttATAATCATTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                                      <  2:340230/140‑1 (MQ=255)

        taTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                                      <  2:372226/140‑1 (MQ=255)

        gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                                      <  1:654144/141‑1 (MQ=255)

        gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                                      <  1:665042/141‑1 (MQ=255)

         aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                                                                                     <  2:731384/141‑1 (MQ=255)

         aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                                                                                     >  2:545654/1‑141 (MQ=255)

          ttttattttaTAATTCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                                    <  1:204237/141‑1 (MQ=255)

          ttttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGTGGGATTCAAGAGGATGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGATGTTcttctt                                                                                                                                    >  1:392637/1‑141 (MQ=255)

           tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                                   <  1:50046/141‑1 (MQ=255)

           tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                                   <  1:167992/141‑1 (MQ=255)

           tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                                   <  1:447931/141‑1 (MQ=255)

           tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATGCATTGGTTTTCACATTAAGTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                                   <  2:566933/141‑1 (MQ=255)

           tttATTTGATAATCCTTTTCACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                                   <  1:456582/141‑1 (MQ=255)

           tttATGTGATAATTTTGTTGAATTGTGAGGAAGTTTGATTTATCTATTGCATTCCAGATGAAGTTA‑TTTGG‑GTTTAGAGGGTCATAAAAAGAAGCAGTGAGATGGTGTTTTTTGAAACGAGTGTGAACTAGTTTCTtcttg                                                                                                                                   <  2:125126/141‑1 (MQ=255)

            ttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTCG‑GTCTATATTGTGATAAAAAGAACAAGTAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                                                                                  <  1:554517/141‑1 (MQ=38)

             tATTTGATAATCCTTTTGACTTTTTAGATAGTTTTATTTATTCATTGG‑TTTCA‑GTAAAGATAGGCGAGCGTTTCAACTCTTATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  2:162661/141‑1 (MQ=16)

             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTGTTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  2:692287/141‑1 (MQ=255)

             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCGTTGCTTTTCACATTAATTTA‑TTCAG‑GTTTAGAGGGGCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  1:253709/141‑1 (MQ=255)

             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  1:196345/141‑1 (MQ=255)

             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  2:641317/141‑1 (MQ=255)

             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  1:542642/141‑1 (MQ=255)

             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  2:24177/141‑1 (MQ=255)

             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 >  2:227852/1‑141 (MQ=255)

              aTTTGTTAGTGCTTTTGTCTTTTTAGAAAGTTTTATTTATTCAGGGGTTGTCAGATTAATTTA‑TTTAG‑GTTTAGAGGGTGATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                                <  2:152273/141‑1 (MQ=38)

              aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTTTGAACGAGTTTCTtcttgtct                                                                                                                                >  2:90411/1‑141 (MQ=255)

              aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                                <  2:428271/141‑1 (MQ=255)

              aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                                <  2:312290/141‑1 (MQ=255)

              aTTGGATAATACTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTCCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                                <  1:149969/141‑1 (MQ=255)

               ttttgtAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtctt                                                                                                                               <  2:591925/136‑1 (MQ=255)

               tttGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtctt                                                                                                                               <  2:485511/141‑1 (MQ=255)

               tttGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtctt                                                                                                                               <  1:568634/141‑1 (MQ=255)

                 tGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTAACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGa                                                                                                                             >  2:213493/1‑141 (MQ=255)

                   atatTCCTTTTAAGTTTTTAGAAAGTTTTATTTATTCATTGGTTTTGACATTAATTTA‑TTTAG‑TTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATa                                                                                                                           <  2:577992/141‑1 (MQ=38)

                   aTAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATa                                                                                                                           >  2:715606/1‑141 (MQ=255)

                         cTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtatat                                                                                                                     <  1:627901/141‑1 (MQ=255)

                         cTTTTGAATTTTTAGAAAGTTTTATTTATTCATTTGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtatat                                                                                                                     <  2:251544/141‑1 (MQ=255)

                          ttttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtatata                                                                                                                    <  2:137640/141‑1 (MQ=255)

                          ttttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtatata                                                                                                                    <  1:118469/141‑1 (MQ=255)

                          ttttAACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGACGAAGGAATAGATTGTTTTTTGAAACGAGAGTGAACGAGTATCTTCTTTTCTTGATATtatata                                                                                                                    >  2:38431/1‑141 (MQ=255)

                           tttGACTTTTTAGTAATTTTTATTTATTCATTGTTTTTCTCATTAATTTA‑TTTAT‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATATGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAg                                                                                                                   <  2:626345/141‑1 (MQ=38)

                            ttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGa                                                                                                                  <  2:440646/141‑1 (MQ=255)

                             tGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGGGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaa                                                                                                                 >  1:720272/1‑141 (MQ=255)

                               agtttttAGAAAGTTTTATTTATTCATTGGTTTTTACATTAATTTA‑TTTAT‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAAt                                                                                                               <  2:528757/139‑1 (MQ=255)

                               aCTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAAt                                                                                                               >  1:128462/1‑141 (MQ=255)

                                  ttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGACGGTATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                            <  2:415389/141‑1 (MQ=255)

                                  ttatAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                            <  1:296018/138‑1 (MQ=255)

                                  ttatAGAAAGTTTTATTTATTCATTGGTGTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                            <  2:744980/138‑1 (MQ=255)

                                   tttAGATAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAATGAAGATGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                                                                                           <  2:457720/141‑1 (MQ=255)

                                   tttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                                                                                           <  1:46754/141‑1 (MQ=255)

                                     tAGAGAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGTGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCg                                                                                                         <  2:663205/141‑1 (MQ=255)

                                     tAGAAAGTTTTATTTATTAATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCg                                                                                                         <  2:609355/141‑1 (MQ=255)

                                          agatttatataTTTATTGATTTACAGATTAATTTA‑GTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtttt                                                                                                    <  2:400595/138‑1 (MQ=38)

                                                atttattCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGACACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtctatat                                                                                              >  2:515168/1‑141 (MQ=255)

                                                        aTTGGTTTCCTGCTTAATTGA‑TGTAG‑GTTTAGAGGGTTAGAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGt                                                                                      <  1:101113/141‑1 (MQ=38)

                                                         ttGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTa                                                                                     <  1:235280/141‑1 (MQ=255)

                                                           ttttttAATATTAATTTA‑TTTAG‑GTTTAGAGTGTAATAAAAAGAATAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAATGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATTTATATAGCTGTAAc                                                                                   <  2:17892/139‑1 (MQ=38)

                                                           ggTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTTATACTATATAGAAATATCTCGTTTTTTTTTTTATATCTGTAAc                                                                                   >  2:259361/1‑141 (MQ=38)

                                                           ggTTTTAACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAAc                                                                                   <  2:67725/141‑1 (MQ=255)

                                                             ttttCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAGCAAGGAAGAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTg                                                                                 <  1:710499/141‑1 (MQ=255)

                                                             ttgtCACATTGATTTA‑GGTAG‑GTATAGGGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTCTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTg                                                                                 <  1:78680/138‑1 (MQ=38)

                                                              tttCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGt                                                                                <  1:243770/141‑1 (MQ=255)

                                                               ttCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGtt                                                                               <  1:279369/141‑1 (MQ=255)

                                                                         ttta‑tttaG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAg                                                                     <  1:528168/141‑1 (MQ=255)

                                                                           ta‑tttaG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtg                                                                   >  1:58161/1‑141 (MQ=255)

                                                                            a‑tttaG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtgt                                                                  >  1:91147/1‑141 (MQ=255)

                                                                              tttaG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGtt                                                                 <  2:706471/141‑1 (MQ=255)

                                                                               ttaG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGttt                                                                <  1:641039/141‑1 (MQ=255)

                                                                               ttaG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATAAATAGCTTTAAATGTTGAGATTACAGTGttt                                                                >  1:429715/1‑141 (MQ=255)

                                                                                     tttAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACg                                                           <  1:15547/141‑1 (MQ=255)

                                                                                         gagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtt                                                       <  1:33442/141‑1 (MQ=255)

                                                                                         gagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtt                                                       <  1:363336/141‑1 (MQ=255)

                                                                                         aagGGTCATAAAAAGAAGAAGGAATAGGTTGTTATCTATATTGAGTGGGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtt                                                       <  1:320560/140‑1 (MQ=255)

                                                                                             gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                                   >  2:355907/1‑141 (MQ=255)

                                                                                                aTAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGc                                                >  2:199950/1‑141 (MQ=255)

                                                                                                 tAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCg                                               >  2:326557/1‑141 (MQ=255)

                                                                                                   aaaaGAAGAAGGAATAGGTTGTTTTTTGAAATTAGTGTGAACGAGTTTCTTCTTTTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTg                                             <  2:673237/141‑1 (MQ=255)

                                                                                                         aggatgAATATGTTGTTTTTTTAAACTAGTGTGTACGAGTTTCTTCTTGTCTTGATACTATAGAGAAGTATCTCGATTTTCAATATATATCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGa                                       <  2:11258/136‑1 (MQ=255)

                                                                                                         agaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATGTATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGa                                       >  1:67698/1‑141 (MQ=255)

                                                                                                               aaTAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAAttt                                 >  1:696253/1‑141 (MQ=255)

                                                                                                                aTAGTTTGTTTTTTGGAACGAGTGTGAAAGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTg                                <  2:76950/141‑1 (MQ=255)

                                                                                                                       tttttttTAAACGAGTGTGAACATATTTGTTATTGTCTTAATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTAATATTACAGTGTTTAAACGTGTTTTTGTGAGTGAAAGGAAAATTTGACAATaa                         <  2:296976/140‑1 (MQ=255)

                                                                                                                         tttttGAAACGAGTGTGAACGAGTTTTTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaa                       <  2:474254/141‑1 (MQ=255)

                                                                                                                         gttttGAAACGAGTGTGAACGAGTTTCTTATTGTATTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATAATACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaa                       <  2:27459/140‑1 (MQ=255)

                                                                                                                            ttGAAAGGAGTGTGAACAAGTTTCTTCATGTCTTGATAATATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAC                    <  2:188640‑M1/141‑1 (MQ=255)

                                                                                                                            ttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAC                    <  1:183809‑M1/141‑1 (MQ=255)

                                                                                                                              gAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCC                  <  1:139112‑M1/141‑1 (MQ=255)

                                                                                                                               aaaCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCC                 <  1:346473‑M1/141‑1 (MQ=255)

                                                                                                                                 aCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAG               <  1:73942‑M1/141‑1 (MQ=255)

                                                                                                                                  cGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGT              <  1:408052‑M1/141‑1 (MQ=255)

                                                                                                                                     agaggAACGAGTTTCTTCTTGTCCTGATACTATAGAGAAATAACTCCATTTTATATATAGAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTtat           <  1:97115/137‑1 (MQ=255)

                                                                                                                                       gtgAACGAGTTTTTTTTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTatat         <  2:504836/141‑1 (MQ=255)

                                                                                                                                         gAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAATTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTAtatta       >  1:615863/1‑141 (MQ=255)

GTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTA‑TTTAG‑GTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAG  >  NC_012417/2809‑3089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.