| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 42564 = | 341 (1.190) | 16 (0.070) +TACATTATAAAATACATATC |
8/120 | NT | 6.7% | coding (1402/1524 nt) | USA300TCH1516_00035 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2479065 | 251 (0.870) | intergenic (+21/+119) | USA300HOU_RS12765/hrtA_2 | hypothetical protein/Putative hemin import ATP‑binding protein HrtA | |||||
AATGGCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/42604‑42564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTT < USA300TCH1516_ALE/2479065‑2478991 |||||||||||||||||||| AATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGAT < 1:1310817/91‑1AATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGAT < 2:4045468/91‑1 ATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATA < 1:730350/91‑1 ATGGCACTTAATATAAGGAAAATAGCAGCTAAACGAGGTGTACATTATAAAATACAAATCAAAAAAGCTGATTTCTATTAATTATTTGATA < 2:2698212/91‑1 aGGCACTTAATATAAGGAAAATAGCAACTCAACGAGCTGTACATTATAAAATAAAAAAAAAAAAAGCTGATTTCTATTAATTATTTGATAG < 2:251460/90‑1 TGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAG < 2:2036271/91‑1 TGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAG < 2:251651/91‑1 GGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATgga < 2:4620899/91‑4 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 2:4970243/91‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 2:4061249/91‑1 ACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 2:3325547/91‑1 aTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAATC < 1:4965579/90‑1 CTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAATC < 1:4057211/91‑1 TTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCA < 1:558191/91‑1 TAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAG < 2:2533606/91‑1 gcAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAGCTTTTTTGATATGTAT < 2:4858061/89‑1 TTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTT > 1:4811527/1‑91 |||||||||||||||||||| AATGGCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/42604‑42564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAGCTTTTTTGATATGTATTTTATAATGTACAGCTCGTT < USA300TCH1516_ALE/2479065‑2478991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |