BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 14186	290 (1.010)	16 (0.060)	14/142	NT	5.5%	intergenic (+87/‑563)	serS_1/ygaZ	Serine‑‑tRNA ligase/Inner membrane protein YgaZ
*	?	USA300TCH1516_ALE	= 14200	292 (1.150)	16 (0.060)	14/142	NT	5.5%	intergenic (+101/‑549)	serS_1/ygaZ	Serine‑‑tRNA ligase/Inner membrane protein YgaZ

Only 100 of 414 total aligned reads displayed.

TACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATT  >  USA300TCH1516_ALE/14110‑14290

 aCAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGc                                                                                           >  2:404801‑M2/1‑90 (MQ=255)

 aCAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGc                                                                                           <  1:1464301‑M2/91‑2 (MQ=255)

  cAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGcc                                                                                          <  1:3059580‑M2/91‑3 (MQ=255)

  cAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGcc                                                                                          <  1:3881523‑M2/91‑3 (MQ=255)

  cAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGcc                                                                                          >  1:2804795‑M2/1‑89 (MQ=255)

  cAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGcc                                                                                          >  1:1323137‑M2/1‑89 (MQ=255)

  cAAGCATTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGcc                                                                                          >  1:2133028‑M2/1‑89 (MQ=255)

     gCTTTAAAAAGTGTATATGTACGTATACTTAAAGCAAGGGCAAGATACTCTAAGTAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGccact                                                                                       >  2:3168440‑M2/1‑86 (MQ=255)

     gCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGccact                                                                                       >  2:4942913‑M2/1‑86 (MQ=255)

     gCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGccact                                                                                       >  2:1692540‑M2/1‑86 (MQ=255)

     gCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGccact                                                                                       >  1:3829561‑M2/1‑86 (MQ=255)

      cTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGccactt                                                                                      <  2:4793919‑M2/91‑7 (MQ=255)

        ttAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGccactttt                                                                                    <  2:2891304‑M2/91‑9 (MQ=255)

         tAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGccacttttt                                                                                   >  1:4249094‑M2/1‑82 (MQ=255)

          aaaaaGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACtttttt                                                                                  <  1:4546875/91‑1 (MQ=255)

           aaaaGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACttttttt                                                                                 >  1:1671359/1‑91 (MQ=255)

            aaaGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTtg                                                                                >  1:3345986/1‑91 (MQ=255)

             aaGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTtgt                                                                               <  2:2303349/91‑1 (MQ=255)

             aaGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTtgt                                                                               <  2:1919282/91‑1 (MQ=255)

                tatataTCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCt                                                                            >  1:3955510/1‑91 (MQ=255)

                 atatatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTg                                                                           >  2:4014623/1‑91 (MQ=255)

                 atatatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTg                                                                           <  1:914913/91‑1 (MQ=255)

                 atatatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTg                                                                           >  2:1970443/1‑91 (MQ=255)

                 atatatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACATTTTTTGTGCTg                                                                           >  2:3623080/1‑91 (MQ=255)

                   atatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTa                                                                         <  2:421313/91‑1 (MQ=255)

                   atatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTa                                                                         >  1:3649358/1‑91 (MQ=255)

                    tatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTaa                                                                        >  1:3512887/1‑91 (MQ=255)

                    tatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTaa                                                                        >  2:2387037/1‑91 (MQ=255)

                    tatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCAACTTTTTTTGTGCTGTaa                                                                        >  2:137471/1‑91 (MQ=255)

                       cTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAg                                                                     <  2:3382855/91‑1 (MQ=255)

                            tataCTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTataa                                                                >  1:2404644/1‑91 (MQ=255)

                             ataCTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTataat                                                               >  1:5312642/1‑91 (MQ=255)

                               aCTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAg                                                             <  1:3233221/91‑1 (MQ=255)

                                 ttAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTg                                                           <  1:2589614/91‑1 (MQ=255)

                                 ttAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTg                                                           <  1:150971/91‑1 (MQ=255)

                                  tAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGCGAC‑‑AGCTTCGTCAccactttttaaaatattatttaaagtatcttgcc                                                          >  1:2260935‑M2/1‑57 (MQ=255)

                                   aaaGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAg                                                         <  1:4892802/91‑1 (MQ=255)

                                   aaaGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAg                                                         <  2:1857947/91‑1 (MQ=255)

                                   aaaGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAg                                                         <  2:2719513/91‑1 (MQ=255)

                                    aaGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGc                                                        >  1:5046614/1‑91 (MQ=255)

                                    aaGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGc                                                        <  2:2483428/91‑1 (MQ=255)

                                      gCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCa                                                      >  2:1996605/1‑91 (MQ=255)

                                      gCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCa                                                      >  2:1029222/1‑91 (MQ=255)

                                         aGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATg                                                   >  2:2798618/1‑91 (MQ=255)

                                          gggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGc                                                  >  2:1589985/1‑91 (MQ=255)

                                          gggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGc                                                  <  1:1859171/91‑1 (MQ=255)

                                          gggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGc                                                  >  2:4255638/1‑91 (MQ=255)

                                           ggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGca                                                 >  1:358997/1‑91 (MQ=255)

                                               aGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATa                                             >  2:785289/1‑91 (MQ=255)

                                               aGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATa                                             >  1:3153073/1‑91 (MQ=255)

                                                gATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaa                                            >  2:3949650/1‑91 (MQ=255)

                                                gATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaa                                            >  2:1497736/1‑91 (MQ=255)

                                                 aTACTTTAAATAATATTGTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaac                                           <  1:2473200/91‑1 (MQ=255)

                                                  tACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaaca                                          <  1:4329621/91‑1 (MQ=255)

                                                    cTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaacaac                                        >  2:2153011/1‑91 (MQ=255)

                                                    cTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaacaac                                        >  1:4068336/1‑91 (MQ=255)

                                                    cTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaacaac                                        >  1:694217/1‑91 (MQ=255)

                                                    cTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaacaac                                        >  1:4193484/1‑91 (MQ=255)

                                                    cTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATaacaac                                        <  2:924225/91‑1 (MQ=255)

                                                      ttAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAAcaacaa                                      <  2:3576248/91‑1 (MQ=255)

                                                      ttAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAAcaacaa                                      >  1:2192668/1‑91 (MQ=255)

                                                      ttAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAAcaacaa                                      >  1:2085955/1‑91 (MQ=255)

                                                       tAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAAt                                     >  1:5648249/1‑91 (MQ=255)

                                                       tAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAAt                                     <  1:4988721/91‑1 (MQ=255)

                                                          ataataTTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATaaa                                  <  1:1262441/91‑1 (MQ=255)

                                                           taataTTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAAt                                 >  1:3728438/1‑91 (MQ=255)

                                                            aataTTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAAtt                                <  1:1173825/91‑1 (MQ=255)

                                                            aataTTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAAtt                                <  1:278684/91‑1 (MQ=255)

                                                             atatTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTa                               >  2:3065875/1‑91 (MQ=255)

                                                               atTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAg                             <  2:5393668/91‑1 (MQ=255)

                                                                ttttAAAAATTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGt                            >  1:472062/1‑91 (MQ=255)

                                                                 tttAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGtt                           >  1:444602/1‑91 (MQ=255)

                                                                  ttAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGttt                          <  1:3433995/91‑1 (MQ=255)

                                                                  ttAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGttt                          >  1:5468330/1‑91 (MQ=255)

                                                                  ttAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGttt                          <  1:4963846/91‑1 (MQ=255)

                                                                  ttAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGttt                          >  2:3248763/1‑91 (MQ=255)

                                                                     aaaaGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTtgtg                       <  1:5218254/91‑1 (MQ=255)

                                                                      aaaGTGGTGTCGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTgg                      <  2:5355424/91‑1 (MQ=255)

                                                                       aaGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGt                     <  2:4602429/91‑1 (MQ=255)

                                                                         gtggtgACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGttt                   >  2:3020182/1‑91 (MQ=255)

                                                                         gtggtgACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGttt                   <  2:1079160/91‑1 (MQ=255)

                                                                            gtgACGAAGCT‑‑GTCGccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaaagcttgt                <  2:584134‑M2/91‑77 (MQ=255)

                                                                              gACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATgg              >  1:1028665/1‑91 (MQ=255)

                                                                               aCGAAGCT‑‑GTCGccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaaagcttgtagc             <  1:1418831‑M2/91‑80 (MQ=255)

                                                                               aCGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATggg             <  1:4609123/91‑1 (MQ=255)

                                                                                 gAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGt           <  1:537798/91‑1 (MQ=255)

                                                                                    gCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTCTAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGaa        <  1:5246742/91‑1 (MQ=255)

                                                                                    gCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGaa        <  2:1253401/91‑1 (MQ=255)

                                                                                    gCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGaa        >  2:5020597/1‑91 (MQ=255)

                                                                                     cT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAAc       <  1:2030930/91‑1 (MQ=255)

                                                                                     cT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAAc       >  1:1913530/1‑91 (MQ=255)

                                                                                     cT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAAc       <  2:3845368/91‑1 (MQ=255)

                                                                                     cT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAAc       <  2:5180534/91‑1 (MQ=255)

                                                                                      t‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTACGGTTTAATGGGGTGAACg      >  1:5561030/1‑91 (MQ=255)

                                                                                         gTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGc     <  2:4379358/91‑1 (MQ=255)

                                                                                           cGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCAt   <  1:4809303/91‑1 (MQ=255)

                                                                                           cGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCAAATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCAt   <  2:1748322/91‑1 (MQ=255)

                                                                                            gCCACTTTTTTTGTGCTGTAAAAGTATAATAGTTAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCAtt  >  1:2938937/1‑91 (MQ=255)

                                                                                            gCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCAtt  >  2:2984088/1‑91 (MQ=255)

                                                                                            gCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCAtt  >  1:766802/1‑91 (MQ=255)

TACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCT‑‑GTCGCCACTTTTTTTGTGCTGTAAAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATT  >  USA300TCH1516_ALE/14110‑14290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.