| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 450716 | 24 (0.370) | 33 (0.590) | 27/226 | NT | 63.6% | intergenic (+83/‑281) | speC_3/tst_2 | Exotoxin type C/Toxic shock syndrome toxin‑1 |
| ? | USA300TCH1516_ALE | 451778 = | 17 (0.300) | intergenic (+77/‑369) | tst_2/USA300HOU_RS02140 | Toxic shock syndrome toxin‑1/hypothetical protein | |||||
CATGGCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACAACGGGATCAGTTTTATTTAACGAACATTATAGATT > USA300TCH1516_ALE/450576‑450856 | cATGGCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTT > 1:710142‑M1/1‑141 (MQ=255) tGGCAGATGTCATAGATGGCACTAATATTGATCACATTGAAGTGAATATAAAATAATCATGACAATCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGAAAACGGCCTACATGTTCCATAGCTTCATTTtt > 2:118344‑M1/1‑139 (MQ=255) tGGCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGt > 2:302976/1‑141 (MQ=255) cAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAAGAATCATGACATTCTCTAAATAGAAGCTGTCATCGTAGAAACAAGAAGTTAAGTGACTACGGCCTACATGTTGCTTAGCTTCTTTTttgtg > 2:433908‑M1/1‑136 (MQ=255) aGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgt > 1:73576‑M1/1‑135 (MQ=255) aGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAACTATAAGCTGTCATCGGAAAAAACAGAAATTAAGTGACAACGGCCTCAATGTTTCTTAGCTTCTTTTttgtgttggaaagct > 2:147145‑M1/1‑126 (MQ=255) aGATGGCACTAATATTAATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTAGCATCGGAAAAACAAGAAGTTAAGTAACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCgatgct > 2:204148/1‑139 (MQ=255) tGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaa > 1:747543‑M1/1‑123 (MQ=255) tGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCCTTTtggtgttggagagatgaa < 1:405512‑M1/141‑19 (MQ=255) gCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaa < 1:498725‑M1/141‑21 (MQ=255) aaTATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaag < 1:519579‑M1/141‑26 (MQ=255) atatTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagc < 1:371094‑M1/141‑27 (MQ=255) aaattgATAATATTGAAGTGAATATAAAATAATCATGACATTCCTTAAATAGAAGCGGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagc < 2:774311‑M1/139‑27 (MQ=255) ttGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTACATAGAATCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgta > 1:416087‑M1/1‑112 (MQ=255) gATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatc > 1:83441‑M1/1‑110 (MQ=255) gATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATAGGAAAAACAAGAAGTTAAGTGACAACGGCCTACAAGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtata > 2:143705‑M1/1‑110 (MQ=255) gATAACAATGAAGTGAATATAAAATAATCCTGACATTCTCTAAAGAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGGGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAAttt < 1:703315/141‑1 (MQ=255) tAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTCCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTc > 1:22484/1‑141 (MQ=255) aCATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAGCGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGGGAACCCGAATTTTCGa > 1:172812/1‑141 (MQ=255) aCATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCgt > 1:562601/1‑140 (MQ=255) aTTGAAGTGAATATAGAATCATCATGACATTCTCTAAATAGAAGCTGTAATCGGAAAAACACGAAGTGAAGTGAGAACGGCCTACATGTTACTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcatatcgatgaa > 1:589322‑M1/1‑104 (MQ=255) aTTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaa > 2:664033‑M1/1‑104 (MQ=255) tGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATggg > 2:299905/1‑141 (MQ=255) gAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAATGGCCTACATGTTGCTTAGCTTCTTTGttgtgttggagtgatgaaaatgaatcgtatcgatgaataa > 2:717450‑M1/1‑101 (MQ=255) gAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcttatcgatgaataa > 2:269383‑M1/1‑101 (MQ=255) gAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataa < 1:428021‑M1/141‑41 (MQ=255) aGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGCTTTGAGAACCCGAATTTTCGATGGGTcc > 2:656436/1‑141 (MQ=255) atatAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAata > 2:725233/1‑141 (MQ=255) tataAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCGACATGTTGCTTAGCTTCTTCTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaaca < 1:418145‑M1/141‑49 (MQ=255) aaaTAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggcgagatgaaaatgaagcgtctcgatgaataataaaaacaccaa > 2:618916‑M1/1‑89 (MQ=255) aaaTAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACg > 1:123018/1‑141 (MQ=255) tCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaac < 1:779656‑M1/141‑59 (MQ=255) cATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTTTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAaga < 1:423402/141‑1 (MQ=255) aCATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCTAATATGACGTGGAAGAGAcc < 1:479743/141‑1 (MQ=255) aTTGTCTAAATAGAAGCGGTCATCGGAAAAACAAGCAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGACTTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTg < 2:208978/141‑1 (MQ=255) aTTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtgga > 1:234296‑M1/1‑76 (MQ=255) ttCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaa > 2:327955‑M1/1‑75 (MQ=255) ttCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGa > 1:599021/1‑141 (MQ=255) tctcTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaa < 2:778074‑M1/141‑68 (MQ=255) aTAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttttttttttttgatgaaaatgaagcgtatcgatgattaataaaaataccgataaaacttgtggaaatagttga > 2:53523‑M1/1‑67 (MQ=255) aaGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGGTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatact < 2:255177‑M1/141‑79 (MQ=255) gCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAGAt > 1:233559/1‑141 (MQ=255) gCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAAt > 1:233419/1‑141 (MQ=255) cTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATc < 1:565217/141‑1 (MQ=255) cATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTGTGCTTCTCTTctgtttaggagagatgaaaatgaagcatatcgctgaagcataaaaacaccaataaaacttgtgggaatagttgatacttatcatc > 2:48817‑M1/1‑56 (MQ=255) cGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcg > 2:687022‑M1/1‑53 (MQ=255) taaCAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTCTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCgg < 1:553737/140‑1 (MQ=255) cAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGgtg > 1:527466/1‑141 (MQ=255) cAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGgtg > 1:279262/1‑141 (MQ=255) aagaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtcct < 2:648011‑M1/141‑98 (MQ=255) agaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttgtagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaagcttgtggaaatagttgatacttatagtcgcgcgttgtcctt > 1:541829‑M1/1‑43 (MQ=255) agaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtcctt > 1:247036‑M1/1‑43 (MQ=255) agaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtcctt > 1:246997‑M1/1‑43 (MQ=255) gaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGAGCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGa < 2:130461/141‑1 (MQ=255) aaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGa < 1:693208/140‑1 (MQ=255) gACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaccttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatg < 2:311499‑M1/141‑110 (MQ=255) aCAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatga < 2:644769‑M1/141‑111 (MQ=255) ccTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggcaatagttgatacttatagtcgcgcgttgtccttttcgtgaactgaaacaatg > 2:313435‑M1/1‑24 (MQ=255) cATGTTGCTTAGCTTCTTTTGTTATGGTCGATGATTTGAGAACCCGAATTTTTGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACAACGGGATCAGTtttat < 2:259146/141‑1 (MQ=255) tAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagt < 1:327955‑M1/141‑131 (MQ=255) tAGCTTCTGGTGTTATGTTAGATGAGTTGAGACCCCGAATGTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTCAATCCCTATCTAGCGGGTGTGAAGCACAACGGGATCAGTTTTATTTAACGAAc < 2:14010/141‑1 (MQ=255) tAGCGTCTTTTttgtgttggagagatgaaaatgaagcgtatcgaggaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagt < 1:209024‑M1/141‑131 (MQ=255) gCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagtta > 1:435586‑M1/1‑9 (MQ=255) cttcttTTttgagttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgataattatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaa > 2:625156‑M1/1‑8 (MQ=255) cttcttTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACACCGGGATGAGTGTTATTTAACGGACAtt > 1:336318/1‑141 (MQ=255) ttcttTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaa > 1:345314‑M1/1‑7 (MQ=255) ttttttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaattg > 1:286322‑M1/1‑4 (MQ=255) ttttttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaattg > 1:286334‑M1/1‑4 (MQ=255) ttttttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaattg > 1:362347‑M1/1‑4 (MQ=255) ttttgtgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaattg < 1:487584‑M1/141‑138 (MQ=255) tttttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacactgtgggaaacatagttaaattga > 2:396471‑M1/1‑3 (MQ=255) ttGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGGCGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACAACGGGATAAGTTTTATTTAACGAACATTATAGAt > 1:484299/1‑141 (MQ=255) tGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACAACGGGATCAGTTTTATTTAACGAACATCATAGAtt > 2:670041/1‑141 (MQ=255) | CATGGCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACAACGGGATCAGTTTTATTTAACGAACATTATAGATT > USA300TCH1516_ALE/450576‑450856 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |