| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 450716 | 24 (0.370) | 33 (0.590) | 27/226 | NT | 63.6% | intergenic (+83/‑281) | speC_3/tst_2 | Exotoxin type C/Toxic shock syndrome toxin‑1 |
| ? | USA300TCH1516_ALE | 451778 = | 17 (0.300) | intergenic (+77/‑369) | tst_2/USA300HOU_RS02140 | Toxic shock syndrome toxin‑1/hypothetical protein | |||||
AATCGCATGAGTGACGTCATTGACGGTAGAAATATTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTGA > USA300TCH1516_ALE/451639‑451915 | tggcagatgtcatagatggcactaatattgatcacattgaagtgaatataaaataatcatgacaatctctaaatagaagctgtcatcggaaaaacaagaagttaagtgaaaacggcctacatgttccatagcttcattttt > 2:118344‑M2/140‑141 (MQ=255)aagcGCATGAGTGACGTCATTGACGGTAGAAATATTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCtttttt < 1:550532/138‑1 (MQ=255) cagatgtcatagatggcactaatattgataacattgaagtgaatataaaagaatcatgacattctctaaatagaagctgtcatcgtagaaacaagaagttaagtgactacggcctacatgttgcttagcttcttttTtgtg > 2:433908‑M2/137‑141 (MQ=255) cGCATGAGTGACGTCATTGACGGTAGAAATATTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTtggg > 1:52585/1‑139 (MQ=255) agatgtcatagatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTgtgt > 1:73576‑M2/136‑141 (MQ=255) agatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaactataagctgtcatcggaaaaaacagaaattaagtgacaacggcctcaatgtttcttagcttcttttTTGTGTtggaaagct > 2:147145‑M2/127‑139 (MQ=255) tggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGaa > 1:747543‑M2/124‑141 (MQ=255) tggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcctttTGGTGTTGGAGAGATGaa < 1:405512‑M2/18‑1 (MQ=255) tCATTGACGGTAGAAATATTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGaa > 1:639665/1‑141 (MQ=255) cATTGACGGTAGAAATATTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGaaa > 2:296556/1‑141 (MQ=255) gcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGaaaa < 1:498725‑M2/20‑1 (MQ=255) aatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAg < 1:519579‑M2/25‑1 (MQ=255) atattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGc < 1:371094‑M2/26‑1 (MQ=255) aaattgataatattgaagtgaatataaaataatcatgacattccttaaatagaagcggtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGc < 2:774311‑M2/26‑1 (MQ=255) gTAGAAATATTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCg < 1:17687/141‑1 (MQ=255) ttgataacattgaagtgaatataaaataatcatgacattctctacatagaatctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTa > 1:416087‑M2/113‑141 (MQ=255) gataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATc > 1:83441‑M2/111‑141 (MQ=255) gataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcataggaaaaacaagaagttaagtgacaacggcctacaagttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTata > 2:143705‑M2/111‑140 (MQ=255) atTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATg > 2:243822/1‑141 (MQ=255) attgaagtgaatatagaatcatcatgacattctctaaatagaagctgtaatcggaaaaacacgaagtgaagtgagaacggcctacatgttacttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCATATCGATGaa > 1:589322‑M2/105‑141 (MQ=255) attgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGaa > 2:664033‑M2/105‑141 (MQ=255) gaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaatggcctacatgttgcttagcttctttgTTGTGTTGGAGTGATGAAAATGAATCGTATCGATGaataa > 2:717450‑M2/102‑141 (MQ=255) gaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCTTATCGATGaataa > 2:269383‑M2/102‑141 (MQ=255) gaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGaataa < 1:428021‑M2/40‑1 (MQ=255) aaaaTAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGaataat < 1:608040/141‑1 (MQ=255) aaaaTAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGaataat < 1:675577/141‑1 (MQ=255) tataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggccgacatgttgcttagcttcttctTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAaca < 1:418145‑M2/48‑1 (MQ=255) aaGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAaca < 1:591490/141‑1 (MQ=255) aaGCCAAAATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGTAAATGTAGCGTATCGATGAATAATAAAAaca < 2:219997/141‑1 (MQ=255) aaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGCGAGATGAAAATGAAGCGTCTCGATGAATAATAAAAACACCaa > 2:618916‑M2/90‑141 (MQ=255) tcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAAc < 1:779656‑M2/58‑1 (MQ=255) tAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAAc > 2:46822/1‑141 (MQ=255) attctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGa > 1:234296‑M2/77‑141 (MQ=255) ttctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGaa > 2:327955‑M2/76‑141 (MQ=255) tctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGaaa < 2:778074‑M2/67‑1 (MQ=255) atagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTTTTTTTTTTTGATGAAAATGAAGCGTATCGATGATTAATAAAAATACCGATAAAACTTGTGGAAATAGTTGa > 2:53523‑M2/68‑141 (MQ=255) aagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatggtgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACt < 2:255177‑M2/78‑1 (MQ=255) ataataGTAAAATATGGATAGTATGGAGCAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAAGAAAACTTGTGGAAATAGTTGATACTta > 1:501451/1‑141 (MQ=255) taataGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTtat < 2:208367/141‑1 (MQ=255) ataGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAGTAAAACTTGTGGAAATAGTTGATACTTATAg > 1:143708/1‑141 (MQ=255) catcggaaaaacaagaagttaagtgacaacggcctacatgttgctgtgcttctcttCTGTTTAGGAGAGATGAAAATGAAGCATATCGCTGAAGCATAAAAACACCAATAAAACTTGTGGGAATAGTTGAtacttatcatc > 2:48817‑M2/57‑137 (MQ=255) cggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTcgcg > 2:687022‑M2/54‑141 (MQ=255) atatGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGt > 1:287749/1‑141 (MQ=255) aagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCt < 2:648011‑M2/97‑1 (MQ=255) agaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGTAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAGCTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCtt > 1:541829‑M2/44‑141 (MQ=255) agaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCtt > 1:247036‑M2/44‑141 (MQ=255) agaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCtt > 1:246997‑M2/44‑141 (MQ=255) gTATAGGGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCtctt < 2:8290/141‑1 (MQ=255) agagGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTGCTGTTCGTg > 1:100088/1‑141 (MQ=255) gacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAACCTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATg < 2:311499‑M2/109‑1 (MQ=255) acaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGa < 2:644769‑M2/110‑1 (MQ=255) tAGGCAACATAAGTTGCTTAGCTTCTTTTTTTTTTTTTTTTCATGAAAATGAAGCGTATCGATGAATAATAAAGACACCAATAAAACTTGTGGAGATAGTTCATACTTATAAGGGCGCGTGGTCCTTTTCGTGACTTGaaa > 2:192392/1‑141 (MQ=255) ggCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACa > 1:13096/1‑141 (MQ=255) cctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGCAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGAACTGAAACAAtg > 2:313435‑M2/25‑141 (MQ=255) aGTTGCTTAGCTTCTTTTTTTTTTTTTTTTGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGaaa > 2:227830/1‑141 (MQ=37) tagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGt < 1:327955‑M2/130‑1 (MQ=255) tagcgtcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGAGGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGt < 1:209024‑M2/130‑1 (MQ=255) gcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTa > 1:435586‑M2/10‑141 (MQ=255) cttcttttTTGAGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATAATTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTaa > 2:625156‑M2/9‑141 (MQ=255) ttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTaaa > 1:345314‑M2/8‑141 (MQ=255) ttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTg > 1:362347‑M2/5‑141 (MQ=255) ttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTg > 1:286334‑M2/5‑141 (MQ=255) ttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTg > 1:286322‑M2/5‑141 (MQ=255) ttttGTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTg < 1:487584‑M2/137‑1 (MQ=255) tttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACACTGTGGGAAACATAGTTAAATTGa > 2:396471‑M2/4‑141 (MQ=255) | AATCGCATGAGTGACGTCATTGACGGTAGAAATATTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTGA > USA300TCH1516_ALE/451639‑451915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |