| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1697752 = | 74 (0.820) | 5 (0.060) | 5/228 | NT | 7.9% | intergenic (+8/+37) | rpsT/USA300HOU_RS08460 | 30S ribosomal protein S20/hypothetical protein |
| ? | USA300TCH1516_ALE | 1697788 = | 51 (0.640) | intergenic (+44/+1) | rpsT/USA300HOU_RS08460 | 30S ribosomal protein S20/hypothetical protein | |||||
CAACTTGATGAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGAACTTTTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1697902‑1697752‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgaacttttatttTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTTACTTGTCCTAA > USA300TCH1516_ALE/1697788‑1697923 CAACTTGATGAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGA < 1:829322/141‑1CAACTTGATGAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGA > 1:897865/1‑141 AACTTGATGAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGAA > 2:977096/1‑141 GATGAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGAACTTTT > 2:914398/1‑141 ATGAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGAACTTTTA > 1:931509/1‑141 GAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGAACTTTTATT > 2:29689/1‑141 AAACTTAAATCATCATATATGGATAAACAGTTACTACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCTCATGCTTGACCTTTTATTTTTTATAAAGATAGAATGCATAATTCCAGTATTAATTTTTTA > 2:80833/1‑141 AAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTA < 1:502180/141‑1 AAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATA < 2:647456/141‑1 TAAACAGTTCATACCGGAATTATTCATTCTATATTTATAAAAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTCACTGTATTACCATATATGATGATTTAAGTTT < 1:536300/141‑1 AAGTTCAAGCATGCGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAA > 1:955031/1‑141 GCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATCATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTT < 1:617699/141‑1 GCTTCAACTTTTATTTTTTATAAAGATAGAATTAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTT < 1:537701/141‑1 TTGACCTTTTTGTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTTAC < 2:771355/141‑1 TTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTAAATAATTAATCAAGTTGATAATGTCTTAC > 2:737678/1‑141 TATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCGTATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCATGTTGATATTGTCTTATTTGTCCTAA > 2:55015/1‑141 CAACTTGATGAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGAACTTTTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1697902‑1697752‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgaacttttatttTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTTACTTGTCCTAA > USA300TCH1516_ALE/1697788‑1697923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |