BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	895785 =	59 (0.650)	27 (0.340)	15/226	NT	33.1%	coding (806/822 nt)	metQ_2	Methionine‑binding lipoprotein MetQ
*	?	USA300TCH1516_ALE	= 909740	58 (0.740)	27 (0.340)	15/226	NT	33.1%	intergenic (‑663/‑371)	USA300HOU_RS04500/csbD_1	hypothetical protein/Stress response protein CsbD

Only 100 of 108 total aligned reads displayed.

AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAAT  >  USA300TCH1516_ALE/895645‑895924

ggttgttttcaaggggaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaat                                                                                                                                             >  2:393602‑M1/141‑141 (MQ=255)

ggttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatcgggctaat                                                                                                                                             <  2:15293‑M1/1‑1 (MQ=255)

ggttgttttcaagggcaaaaaaagggcataattctgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaat                                                                                                                                             >  2:1057843‑M1/141‑141 (MQ=255)

ggttgttatcaaggccaaaaaaagggcataattttgaaacaaagggcacgggtatgaataataaattatcttgaaaattgtataaatgcatatataacaatgttttgattgcccttgaacttccttgctaatctggctaat                                                                                                                                             <  2:367719‑M1/1‑1 (MQ=255)

ggttgctttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaat                                                                                                                                             >  2:803102‑M1/141‑141 (MQ=255)

aaGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGt                                                                                                                                             <  2:83862/141‑1 (MQ=255)

  ttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaactttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaatta                                                                                                                                           <  1:1042500‑M1/3‑1 (MQ=255)

     ttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTc                                                                                                                                        <  2:535290‑M1/6‑1 (MQ=255)

          gATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCt                                                                                                                                   >  1:934516/1‑141 (MQ=255)

           agggcaaaaaaagggcataatttttaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacgatgttgtgattgcccttgaacttccgtgataatctggctaaTTATTCGTGCTa                                                                                                                                  <  1:705925‑M1/12‑1 (MQ=255)

           agggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggccaaTTATTCCTGCTa                                                                                                                                  >  1:721788‑M1/130‑141 (MQ=255)

           agggaaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTa                                                                                                                                  >  2:88505‑M1/130‑141 (MQ=255)

             aaTCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTaaa                                                                                                                                <  1:326985/141‑1 (MQ=255)

              gcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAaat                                                                                                                               >  2:40219‑M1/127‑141 (MQ=255)

              aTCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAaat                                                                                                                               >  1:575342/1‑141 (MQ=255)

               aaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAaata                                                                                                                              >  1:987607‑M1/126‑141 (MQ=255)

               aaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAaata                                                                                                                              <  2:131152‑M1/16‑1 (MQ=255)

                ccTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAaataa                                                                                                                             >  1:389720/1‑141 (MQ=255)

                      agggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCaa                                                                                                                       <  2:12238‑M1/23‑1 (MQ=255)

                       cAAACTTAACTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAAt                                                                                                                      <  1:838832/141‑1 (MQ=255)

                        aaccTTAATTGATGTTAAAGAAGGATATGAAGAAGATAAGAAAATCAAAGCATTAATGGAAGTATTACAATCTAACGATATTTAAGACTTAATTAATGAAAAATACAATGGGGCAGTGATTACTGCATAACAATACCAGtt                                                                                                                     <  2:731411/138‑1 (MQ=255)

                           ataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatcgtgctaaTTATTCCTGCTAAATAATACCAATtaaa                                                                                                                  <  1:256899‑M1/28‑1 (MQ=255)

                             tAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAGTTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTCATGAAAAATACAATAGTGCAGTTATTCTTGCTAAATAATACCAATtaaata                                                                                                                >  2:277564/1‑141 (MQ=255)

                              aaTTGCTGTTAAAGAAAGTCAATAAGATGAAAAGAAAATCAAAGGATTAATTAAAATATTACCTTCTAAAGATATTCAAGACTTCATTAATGAAAAATAAAATGGTGCAGTTATTCCTGCTAAATAATAGCaataaaataa                                                                                                               <  2:389149/141‑1 (MQ=255)

                                tttgaaacaaatggcaagagtatatataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgatcttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATaaaa                                                                                                             >  2:788579‑M1/109‑141 (MQ=255)

                                 tGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATaaaaa                                                                                                            <  2:139550/141‑1 (MQ=255)

                                  gCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATGATACTAATTAAATAAAAAt                                                                                                           <  1:607913/141‑1 (MQ=255)

                                  gCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAAt                                                                                                           <  1:381923/141‑1 (MQ=255)

                                   cTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATa                                                                                                          >  2:833259/1‑141 (MQ=255)

                                           gggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATCACCTttat                                                                                                  <  1:103161‑M1/44‑2 (MQ=255)

                                           gggcaagggtatgaataataaattatcttgaaaattttataaatgcacatatccaactgttttgattgcccttgaacttccttgataatctggctaaTTATTCCCGCCAAATAATACCAATTAACTACAAATCCCCTTtaa                                                                                                  <  2:1005077‑M1/44‑1 (MQ=255)

                                           gggcaagggtatgaataataaattatcttcaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAATTACCCTTtaa                                                                                                  <  2:407744‑M1/44‑1 (MQ=255)

                                               aagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATCCCCATTAATTAAAAATACCCTGTAATaac                                                                                              <  2:546314‑M1/48‑1 (MQ=255)

                                               aagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTATTaac                                                                                              <  1:391788‑M1/48‑1 (MQ=255)

                                                    cAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACACTCTAAAGCTATTCGAGAATTCATTAATGAAAAATACAATGGTGCAGTTATTTCTGCTAAATAATACCAATTAAATAAAAATACCTTTTAATAACAACGa                                                                                         <  2:911975/141‑1 (MQ=255)

                                                    cAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGa                                                                                         >  1:200134/1‑141 (MQ=255)

                                                    cAAGATGATAAGAAAATCAAAGCAATAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATGAAATAAAAGTACCCTTTAATAACAACGa                                                                                         >  1:704246/1‑141 (MQ=255)

                                                       gatgatAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTa                                                                                      >  1:1004341/1‑141 (MQ=255)

                                                       gatgatAAGAAAATCAAAGCATTAATTGAAGCATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTACATAATACCAATTAAATAAAAATACCCTTTAATAACAACGAATa                                                                                      >  2:285518/1‑141 (MQ=255)

                                                             aaGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGt                                                                                <  1:69255/141‑1 (MQ=255)

                                                             aaGAAAATCAAAGCATGAATTGAAGTGTTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTACTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGt                                                                                <  1:675035/141‑1 (MQ=255)

                                                              aGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTACGGGGtt                                                                               >  1:638282/1‑141 (MQ=255)

                                                              aGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGtt                                                                               <  2:608613/141‑1 (MQ=255)

                                                              aGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACGTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATAACAATTAAATAAAAATACTCTTTAATAACAACGAATAAgggtat                                                                               >  2:351363/1‑138 (MQ=255)

                                                              aGAAAACCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGtt                                                                               >  2:168818/1‑141 (MQ=255)

                                                                aaaaTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGAGTAAGGGGatat                                                                             >  1:121653/1‑141 (MQ=255)

                                                                   atcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctccATCTTCGCGCAAGATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAtttt                                                                          <  1:255555‑M1/68‑1 (MQ=255)

                                                                   aTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAtttt                                                                          <  1:311011/141‑1 (MQ=255)

                                                                     cAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACATCGATTAAGGGGTTATTTTtg                                                                        >  1:885035/1‑141 (MQ=255)

                                                                       tgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTtttggg                                                                      <  1:876774‑M1/72‑3 (MQ=255)

                                                                       tgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGCgttattttgttg                                                                      <  1:641015‑M1/72‑5 (MQ=255)

                                                                        aGCATTAATTGAAGTATTATAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTATGGGGTTATTTTTGTgg                                                                     >  1:824864/1‑141 (MQ=255)

                                                                        aGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTagtag                                                                     >  2:930402/1‑139 (MQ=255)

                                                                         gCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTCAGGGGTTAttttttgtgt                                                                    >  1:1006083/1‑136 (MQ=255)

                                                                         gCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGt                                                                    <  1:563616/141‑1 (MQ=255)

                                                                         gCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTAATTAATGAAAAATACAATGGTGCAGTTATTTCTGCTAAATAATACGAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGCGTTATTTTTGTGGt                                                                    >  1:1006081/1‑141 (MQ=255)

                                                                               aTTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACAGTTAAGGGGTTATTTTTGTGGTATTCaa                                                              >  1:308716/1‑141 (MQ=255)

                                                                                    aGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaa                                                         <  1:4475/141‑1 (MQ=255)

                                                                                       aTTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTTTTTTTGTGTTATTGCAAATaaaaa                                                      >  1:283827/1‑141 (MQ=255)

                                                                                        ttACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaaaaaa                                                     >  2:540523/1‑141 (MQ=255)

                                                                                         tACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAg                                                    <  2:934516/141‑1 (MQ=255)

                                                                                          aCAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAgg                                                   >  2:725171/1‑141 (MQ=255)

                                                                                           cAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAggg                                                  <  1:542076/141‑1 (MQ=255)

                                                                                           aaaTCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAggg                                                  <  2:297609/140‑1 (MQ=255)

                                                                                               cTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcaca                                              >  1:462155/1‑141 (MQ=255)

                                                                                               cTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcaca                                              >  1:62348/1‑141 (MQ=255)

                                                                                               cTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcaca                                              >  1:1067268/1‑141 (MQ=255)

                                                                                               cTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGAATTGAAAATAAAAAAGGGcaca                                              >  2:13449/1‑141 (MQ=255)

                                                                                                aaaatgttttgactgcccttgaacttccgtgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaa                                             >  2:247870‑M1/45‑141 (MQ=255)

                                                                                                  aatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                           >  1:267032‑M1/43‑141 (MQ=255)

                                                                                                   aGATAATCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAAGTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAg                                          <  2:1070950/141‑1 (MQ=255)

                                                                                                     atatTCAAGACTTCATTAATGAAAAATACAATGGGGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAggg                                        <  1:285949/141‑1 (MQ=255)

                                                                                                          cAAGACTTCATTAATGAAAAATACAATGGTGCAGATATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGt                                   >  2:183080/1‑141 (MQ=255)

                                                                                                             gACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTTTGTTATTTATAATAAAAAAGGGCATAAAAGGGGCAGtata                                >  2:20134/1‑141 (MQ=255)

                                                                                                              gtccttgaactcccctgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATTACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTatat                               >  2:379795‑M1/31‑141 (MQ=255)

                                                                                                              gcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTatat                               >  2:385106‑M1/31‑141 (MQ=255)

                                                                                                              gcccttgaacttccttgataatctggcaaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTatat                               >  1:230556‑M1/31‑141 (MQ=255)

                                                                                                                cctttaactgtctggataatctggccacTTAGTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACACCGATTAAGGGGTTATTCTTGTGGTATTGAAAAGAAAAAAGGGCACCAAAGGGGCAGTATATGc                             >  2:337282‑M1/29‑141 (MQ=255)

                                                                                                                  cATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAAAAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCaa                           >  2:726011/1‑141 (MQ=255)

                                                                                                                   tgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCaaa                          <  1:782082‑M1/116‑1 (MQ=255)

                                                                                                                    ttAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAAt                         <  1:836152/141‑1 (MQ=255)

                                                                                                                     tAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAAtt                        <  1:545959/141‑1 (MQ=255)

                                                                                                                      aaTGAAAAATAAAATAGTGAAGTTTTTCCTGCTAAAAAATACCAATTAAATAAAAATACCCTTAAATAACAACGATTAAGGGGTTATTTTTGTGGAAAAAAAAAAAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTa                       <  2:324074/141‑1 (MQ=255)

                                                                                                                         gAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAAatattg                    >  2:821490/1‑139 (MQ=255)

                                                                                                                            aaaTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATACAAGAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAt                 >  1:135529/1‑141 (MQ=255)

                                                                                                                            aaaTACAATGGTGCAGTTATGCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTGATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAt                 >  1:674681/1‑141 (MQ=255)

                                                                                                                             tgataatctggctaaTTATTCCTGCTAAATAATACCAATTATATAAACATAACCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATTGAAtt                <  1:757611‑M1/126‑1 (MQ=255)

                                                                                                                             tgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAGAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAtt                <  1:758207‑M1/126‑1 (MQ=255)

                                                                                                                             tgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTTTTGTTTTTTAAATAAAAAAGGGCAAAAAAGGGGCGGTATATGTAAATTATCGAAtt                <  2:819598‑M1/126‑1 (MQ=255)

                                                                                                                             tgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAtt                <  2:483025‑M1/126‑1 (MQ=255)

                                                                                                                             tgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAtt                <  2:819493‑M1/126‑1 (MQ=255)

                                                                                                                              gataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCCCCAAAGGGGCAGTATATGCAAATTATCGAAttt               <  2:76502‑M1/127‑1 (MQ=255)

                                                                                                                                taatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGAATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTa             <  1:108960‑M1/129‑1 (MQ=255)

                                                                                                                                     ggTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaa        >  1:340399/1‑141 (MQ=255)

                                                                                                                                         cAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaaaaaa    >  1:64061/1‑141 (MQ=255)

                                                                                                                                          aGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAATAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaaaaaaa   >  1:1004567/1‑141 (MQ=255)

                                                                                                                                           gTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTTTTTTTTTTTTAATAAAAAAGGGCGCAAAAGGGGCAGTATATGCAAATTTTCGAATTTTAAACAAAAAAAt  >  2:669632/1‑141 (MQ=255)

                                                                                                                                           gTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTGTCGAATTTTAAACAAAAAAAt  >  1:561160/1‑141 (MQ=255)

                                                                                                                                           gTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAAt  >  1:121026/1‑141 (MQ=255)

                                                                                                                                           aTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAAt  >  1:1048767‑M1/2‑141 (MQ=255)

AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAAT  >  USA300TCH1516_ALE/895645‑895924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.