BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2085296 =	60 (0.660)	63 (0.780)	48/232	NT	48.6%	coding (173/201 nt)	hlb_1	Phospholipase C
*	?	USA300TCH1516_ALE	= 2128343	80 (0.990)	63 (0.780)	48/232	NT	48.6%	coding (1/825 nt)	hlb_2	Phospholipase C

Only 100 of 192 total aligned reads displayed.

CTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA  >  USA300TCH1516_ALE/2128204‑2128483

cTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAt                                                                                                                                             <  2:88301‑M2/141‑2 (MQ=255)

cTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCAAAACCCAATAAATACTGTTGTTACAAGGTTTCTAt                                                                                                                                             <  2:296367‑M2/141‑2 (MQ=255)

  aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAGAAAAACAACTAAAATTTTAGAGAGTATATAATTTAGGGACCCATTAGGGACTCCAAACCCAATAACAACTGTTGTTACAGAGTTTCTAtgt                                                                                                                                           <  2:406442‑M2/141‑4 (MQ=255)

  aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgt                                                                                                                                           <  2:1035931‑M2/141‑4 (MQ=255)

  aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgt                                                                                                                                           <  2:102031‑M2/141‑4 (MQ=255)

  aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgt                                                                                                                                           >  1:620322‑M2/1‑138 (MQ=255)

  aCATCCATGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAAGAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgt                                                                                                                                           <  2:694606‑M2/141‑4 (MQ=255)

   cATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGTCACTTTTTTGATTCCAAACCAAATAAAAACTGTTGTTACAAGGTTTCTAtgta                                                                                                                                          <  1:799304‑M2/141‑5 (MQ=255)

      ccGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGATCCCGGATTTACTCCAAACCCACTAAATACTGTTGTTACAAGGTTTCTAtgtatcc                                                                                                                                       <  1:1037356‑M2/141‑8 (MQ=255)

      ccGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatcc                                                                                                                                       <  1:843864‑M2/141‑8 (MQ=255)

       cGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatcca                                                                                                                                      <  2:304631‑M2/141‑9 (MQ=255)

        gtgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaa                                                                                                                                     >  1:396448‑M2/1‑132 (MQ=255)

        gtgtAATCTCATTTGTTAGAAGAAAAATTTAATGAAGAAGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaa                                                                                                                                     >  2:574425‑M2/1‑132 (MQ=255)

        ctgtaTTCTCATTTGTTAGAAGAAAAATTTAATCAAGAGGACAAAAAAACAACTACAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTTCAAACCCAATAAATACTGTTGTTGCAAGGTTTCTAtgtatccaa                                                                                                                                     >  2:605107‑M2/2‑132 (MQ=255)

         tgtTTTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCACTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaa                                                                                                                                    <  2:958911‑M2/141‑11 (MQ=255)

         tgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACCAAAAAACACCTAAAATTTTAGAAAGTCTGTAATTGAGGGACCCATTAGGGAATCCAAACCCAATAAATACTGTTGGTACAAGGTTTCTCtgtatcaaaa                                                                                                                                    <  2:54254‑M2/141‑11 (MQ=255)

         tgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGAAAAAAAAAAAAATAAAGTTTTAGCGAGAATGTAATTTAGGAAAACATTACGGACTCCAAACCCAATACAAACTGTTGTTACAAGTTTTCTATGAATCCaaa                                                                                                                                    >  2:94688/1‑141 (MQ=255)

          gtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaac                                                                                                                                   <  1:892088‑M2/141‑12 (MQ=255)

             ttCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactgg                                                                                                                                <  2:631779‑M2/141‑15 (MQ=255)

              tctcATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTCTGTATCCAAACTggg                                                                                                                               >  2:173388/1‑141 (MQ=255)

                tcATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTggggg                                                                                                                             >  2:184961/1‑141 (MQ=255)

                  aTTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCa                                                                                                                           >  1:215307/1‑141 (MQ=255)

                  aTTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCa                                                                                                                           >  2:465802/1‑141 (MQ=255)

                   tttGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagactt                                                                                                                          >  1:561724‑M2/1‑121 (MQ=255)

                    ttGTTAGAAGAAAAATTTAATTAATAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAat                                                                                                                         >  2:1070005/1‑141 (MQ=255)

                    ttGTTAGAAGAAAAAGTTAATGAATAGGACAAAAAACCAACCAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTGTCTATGTATCCAAACTGGGGGCAat                                                                                                                         <  2:343761/141‑1 (MQ=255)

                         agaagaAAAATTTAATGAAGAGGACAAAAAAACACCTAAAATTTTAGAAAGTATGTAATTTAGGGAACCATAAGGCGCTACAAACCCAATAAAAACTGTTGTTATAAGATTTCTAtgtatccaaactggagacatttaaca                                                                                                                    <  2:877798‑M2/141‑27 (MQ=255)

                         agaagaAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtatatccaaactggagacttttaaca                                                                                                                    <  2:610392‑M2/141‑27 (MQ=255)

                            agaaAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataa                                                                                                                 <  1:69459‑M2/141‑30 (MQ=255)

                              aaaaaTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaa                                                                                                               <  2:273673‑M2/141‑32 (MQ=255)

                                 aaTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGa                                                                                                            >  1:413164/1‑141 (MQ=255)

                                  aTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAt                                                                                                           >  1:678461/1‑141 (MQ=255)

                                   tttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattact                                                                                                          <  2:902758‑M2/141‑37 (MQ=255)

                                    ttAATGAAGAGGACAAAAAGACAACTAAAATTTTAGAAAGTATGTAATTTAGGGATCCATTAGGGATAGCAAACCCATCAAATTCTGGTGTTTCAATGTTGCTATTTATCCAAACTGGGGGCAATATAAACGCGCTGAttt                                                                                                         >  1:587972/1‑141 (MQ=255)

                                    ttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattactt                                                                                                         <  1:282831‑M2/141‑38 (MQ=255)

                                       acgaaGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatc                                                                                                      >  1:124736‑M2/3‑101 (MQ=255)

                                       aTGAAGAGGACAAACAAACAACTAAAATTGTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAAt                                                                                                      >  1:591320/1‑141 (MQ=255)

                                         gAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcat                                                                                                    >  2:245944‑M2/1‑99 (MQ=255)

                                           agagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattc                                                                                                  <  1:76228‑M2/141‑45 (MQ=255)

                                            gagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattca                                                                                                 <  1:13831‑M2/141‑46 (MQ=255)

                                            gagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGAc                                                                                                 >  2:899198/1‑141 (MQ=255)

                                              ggACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATGAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaa                                                                                               <  2:929358‑M2/141‑48 (MQ=255)

                                               gACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaa                                                                                              <  1:459741‑M2/141‑49 (MQ=255)

                                                 aaaaaaaacAACTAAAATTTTAGAAAGTTTGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAGTACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaag                                                                                            >  2:416349‑M2/2‑91 (MQ=255)

                                                   aaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGCCCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagta                                                                                          >  1:26791‑M2/1‑89 (MQ=255)

                                                     aaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATcttctt                                                                                        >  2:262354/1‑141 (MQ=255)

                                                     aaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATcttctt                                                                                        >  1:606123/1‑141 (MQ=255)

                                                      aaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGGGTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaa                                                                                       <  1:978615‑M2/141‑56 (MQ=255)

                                                         ccacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTatat                                                                                    <  1:184208/139‑1 (MQ=255)

                                                         caacTAAAATTTTAGAAAGTATGTCATATAGGGACCCATTAGGGACTCCAAACCAAATAAATACTGTAGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattccttatcattcaaaaagtaaaacag                                                                                    <  2:510007‑M2/141‑59 (MQ=255)

                                                         caacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCACTAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCGGATTTAATCGGACAGTCTTCTTctat                                                                                    >  1:23238/1‑141 (MQ=255)

                                                           acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTa                                                                                  >  2:283972/1‑141 (MQ=255)

                                                           acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTa                                                                                  >  1:772677/1‑141 (MQ=255)

                                                              aaaaTTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTaaaa                                                                               <  1:487210/141‑1 (MQ=255)

                                                               aaaTTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataat                                                                              >  1:94688‑M2/1‑77 (MQ=255)

                                                                  ttttAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAtataa                                                                           <  2:765718/141‑1 (MQ=255)

                                                                       gAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatgttg                                                                      >  2:634844/1‑141 (MQ=255)

                                                                       gAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatgatg                                                                      >  1:1001493/1‑141 (MQ=255)

                                                                        aaaGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtacaacagcataaaataaaggtt                                                                     <  2:63914‑M2/141‑74 (MQ=255)

                                                                         aaGTATGCTATTTAGGGGCCCATTGGGGACTCCAAACCCAATAATTACTGTTGTTACAAGGTTTCTATGTATCCAACCTGGGGGAAATATTAACGCGCTGATTTAATCGGATAATCTTCTTGTATTAAAAATAATGATGTc                                                                    <  2:875508/141‑1 (MQ=255)

                                                                               gTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataact                                                              >  1:454163‑M2/1‑61 (MQ=255)

                                                                                  aTTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTc                                                           <  1:375527/141‑1 (MQ=255)

                                                                                       gggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGa                                                      <  2:360893/141‑1 (MQ=255)

                                                                                        ggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTccctgca                                                     >  2:272128/1‑135 (MQ=255)

                                                                                        ggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGaa                                                     >  2:558387/1‑141 (MQ=255)

                                                                                               ttAGGGACTCCAAACCCAGTAAATACTGGTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAACCATTTg                                              >  2:373476/1‑141 (MQ=255)

                                                                                                tAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGa                                             <  1:304631/141‑1 (MQ=255)

                                                                                                 aGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGaa                                            >  1:63593/1‑140 (MQ=255)

                                                                                                   ggACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaatagcataatatcaaagtttataactttatcattaccaaacattac                                          <  2:264098‑M2/141‑101 (MQ=255)

                                                                                                    gACTCTAAACCCAATAAATACTGTTGTTACATGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTATTCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCATTGAAGCATTTGATAAt                                         <  2:147282/141‑1 (MQ=255)

                                                                                                    gACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAAt                                         <  1:184961/141‑1 (MQ=255)

                                                                                                     aCTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATg                                        <  1:894235/141‑1 (MQ=255)

                                                                                                      cTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                       <  2:705362/141‑1 (MQ=255)

                                                                                                      cTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                       <  1:907551/141‑1 (MQ=255)

                                                                                                       tCCAAATCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataagattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcat                                      >  2:823692‑M2/1‑37 (MQ=255)

                                                                                                       tCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcat                                      <  2:609681‑M2/141‑105 (MQ=255)

                                                                                                         cAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTAACCCAACAGATGATTATATAAACGTTGTTTTTTAATCTGATAATCTTATGATATTAAAAATAATTATGTCATAATATTTAATGAAGCATTTGATATTTGTGc                                    >  2:397472/1‑141 (MQ=255)

                                                                                                          aaaCCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatata                                   <  1:338022‑M2/141‑108 (MQ=255)

                                                                                                          aaaCCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctaatata                                   <  2:548365‑M2/141‑108 (MQ=255)

                                                                                                           aaCCCAATAAATACTGTTGTTACAGGGTTTCTATGTATCCAAACTGAGGGCAGTATAAAGGCGCGGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGGTAAGAGTGCAt                                  >  2:315403/1‑141 (MQ=255)

                                                                                                           aaCCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataa                                  <  1:622989‑M2/141‑109 (MQ=255)

                                                                                                            aCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAAGGAAGCATTTGATAATGGTGCATc                                 >  1:738480/1‑141 (MQ=255)

                                                                                                             cccAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCa                                <  1:1070005/141‑1 (MQ=255)

                                                                                                                aataaataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGAc                             <  2:221890/141‑1 (MQ=255)

                                                                                                                aataaataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGAc                             <  2:678461/141‑1 (MQ=255)

                                                                                                                 ataaataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACa                            <  1:289320/141‑1 (MQ=255)

                                                                                                                  ttaataCGGTTGTTACAAGTTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACaa                           >  2:1098156/3‑141 (MQ=255)

                                                                                                                    aataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAat                         >  1:543269/1‑141 (MQ=255)

                                                                                                                        cTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttag                     <  1:983574‑M2/141‑122 (MQ=255)

                                                                                                                          gttgtcACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATTAGACAACTTATTaa                   <  2:618758/141‑1 (MQ=255)

                                                                                                                          gttgtaACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTaa                   <  2:656806/141‑1 (MQ=255)

                                                                                                                              ttACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactt               >  1:452364‑M2/1‑14 (MQ=255)

                                                                                                                               tACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAAt              <  1:828550/141‑1 (MQ=255)

                                                                                                                                  aaGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggacatttat           <  1:1078291‑M2/141‑132 (MQ=255)

                                                                                                                                  aaGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTTATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAAtgtg           <  1:88301/141‑1 (MQ=255)

                                                                                                                                  aaGGCTTCTATGTATCCGAACTTACGGCAAAATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAGTTATTAAGTAAtgtg           <  2:771873/141‑1 (MQ=255)

                                                                                                                                         ttATGTGTCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCGTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAg    <  2:474517/140‑1 (MQ=255)

                                                                                                                                         cTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttttagggattt    <  1:815953‑M2/141‑139 (MQ=255)

                                                                                                                                         cTATGTATCCAAACGGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAg    <  2:131328/141‑1 (MQ=255)

                                                                                                                                           aTGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGaa  >  1:1051203/1‑141 (MQ=255)

CTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA  >  USA300TCH1516_ALE/2128204‑2128483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.