| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1732970 | 125 (1.130) | 9 (0.090) | 8/252 | 13.5 | 7.3% | intergenic (+156/+81) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1733003 | 114 (1.130) | intergenic (+189/+48) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATAAATAAACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1732819‑1732970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaagcgccccATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTTACTGT < USA300TCH1516_ALE/1733003‑1732867 ATAAATAAACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATAT < 2:376419/141‑1 TAAATAAACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAATAGCAGTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATG < 1:641936/141‑1 AATAAACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAA > 1:559941/1‑141 AACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG > 1:760939/1‑141 AACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG > 1:765554/1‑141 ACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGC > 1:212309/1‑141 ACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGC > 2:184707/1‑141 AAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATCCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC > 4:261679/1‑141 AATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATAT > 1:295136/1‑104 AATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATAT < 2:295136/104‑1 AATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGA < 4:338128/141‑1 AACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT < 3:80844/141‑1 TGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTA < 1:174824/141‑1 AAAGGTGTCTTTATTGTTCAATCAGTTATTTTAGTAATGATTCAAATCCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATCAACACTTACACAGGGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGA < 2:559543/141‑1 AAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGA < 2:559537/141‑1 TTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCATTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACAATTACAAAGTGTAAAGTTGAAGGGGCACTTTCATATTAACATTAGAATTTTAAGT > 2:481807/1‑141 CAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGT > 2:849612/1‑94 CAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGT < 1:849612/94‑1 ACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAA < 1:481807/141‑1 AAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGT > 2:520479/1‑141 AAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGT < 2:142676/141‑1 AAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGT > 2:705632/1‑141 AAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGT > 1:717697/1‑141 AGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTT < 3:51125/71‑1 AGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTT > 4:51125/1‑71 gctCCCCATCAAATAAACACTTACACTGTGGAAAGTTTAAGGTGCGCTTTCATATTTTCATTATAGTTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGTCATCTTTCGTTCTAAATGCGGTgtc > 2:772924/4‑138 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTTAC > 1:151684/1‑141 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTTAC < 4:245082/141‑1 CGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTTACT < 3:138631/141‑1 GCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTTACTG > 3:208054/1‑141 CCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTTACTGT < 2:119711/141‑1 CCCCAGCAAATAAACACTTACACTGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTTACTGT < 2:909002/141‑1 ATAAATAAACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1732819‑1732970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaagcgccccATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTTACTGT < USA300TCH1516_ALE/1733003‑1732867 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |