BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	855629 =	126 (1.140)	3 (0.050) +TCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATT	3/162	12.5	4.3%	intergenic (+160/‑600)	zipA_1/cggR	Cell division protein ZipA/Central glycolytic genes regulator
*	?	USA300TCH1516_ALE	2830190 =	104 (0.940)		3/162	12.5	4.3%	intergenic (+18/+429)	icaC/lipA_2	putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 126 total aligned reads displayed.

ACCAGTATGACAGACAACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCC  >  USA300TCH1516_ALE/855491‑855768

cccAGTGTGACAGACAACACAATTAAGTAGGTTGTATCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTg                                                                                                                                           <  4:238748/140‑1 (MQ=255)

    gTATGACAGACAACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGAc                                                                                                                                       <  1:656096/141‑1 (MQ=255)

    gTATGACAGACAACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGAc                                                                                                                                       >  2:857342/1‑141 (MQ=255)

    gTATGACAGACAACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGAc                                                                                                                                       <  2:760003/141‑1 (MQ=255)

     tATGACAGACAACACAATTAATTAGGTTGTCTCGAATGTTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACa                                                                                                                                      >  1:682506/1‑141 (MQ=255)

         cgagacaACCTAATTAATTGTGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGaaa                                                                                                                                  >  1:679538/3‑141 (MQ=255)

          cagacaACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAAt                                                                                                                                 <  2:247148/141‑1 (MQ=255)

           agacaACACAATTAATTAGGTTGTCTCGAATATGGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATg                                                                                                                                <  1:150588/141‑1 (MQ=255)

             acaacaCAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGat                                                                                                                              >  2:399706/1‑141 (MQ=255)

                acacAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATAtt                                                                                                                           >  3:224259/1‑141 (MQ=255)

                acacAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAAGTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATAtt                                                                                                                           >  2:229269/1‑141 (MQ=255)

                 cacaATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATAttt                                                                                                                          >  1:809405/1‑141 (MQ=255)

                     attaattaGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGc                                                                                                                      <  1:458589/141‑1 (MQ=255)

                      ttaattaGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCa                                                                                                                     >  2:192100/1‑141 (MQ=255)

                       taattaGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCaa                                                                                                                    <  1:200984/141‑1 (MQ=255)

                        aattaGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCaaa                                                                                                                   <  1:773968/141‑1 (MQ=255)

                        aattaGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCaaa                                                                                                                   >  1:269825/1‑141 (MQ=255)

                         attaGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACTGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCaaaa                                                                                                                  >  2:311539/1‑141 (MQ=255)

                         attaGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCaaaa                                                                                                                  >  2:311513/1‑141 (MQ=255)

                          ttaGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAAT‑GTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAatt                                                                                                                >  4:65018/1‑141 (MQ=255)

                           taGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAatt                                                                                                                <  1:857342/141‑1 (MQ=255)

                           taGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAatt                                                                                                                <  2:173347/141‑1 (MQ=255)

                           taGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAatt                                                                                                                >  1:442994/1‑141 (MQ=255)

                             ggTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAattta                                                                                                              >  3:213930/1‑141 (MQ=255)

                             ggTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAattta                                                                                                              >  4:392192/1‑141 (MQ=255)

                             ggTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAattta                                                                                                              >  1:289382/1‑141 (MQ=255)

                              gTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGGGAGGTGGGACAGAAATGATATTTTCGCAAAatttat                                                                                                             >  1:903873/1‑141 (MQ=255)

                               ttGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAatttatt                                                                                                            <  3:137220/141‑1 (MQ=255)

                                 gTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTtc                                                                                                          <  2:679538/141‑1 (MQ=255)

                                   ctcGAATATTGGTTCTTATTTTTATAATGGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcgt                                                                                                        >  2:828601/1‑141 (MQ=255)

                                       aaTATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCgtcgtc                                                                                                    <  1:627143/141‑1 (MQ=255)

                                              gTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAcccc                                                                                             >  1:810996/1‑141 (MQ=255)

                                               ttCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCa                                                                                            <  1:377148/141‑1 (MQ=255)

                                                    aTTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACttt                                                                                       >  2:764759/1‑140 (MQ=255)

                                                     tttttATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTcc                                                                                      >  2:173203/1‑141 (MQ=255)

                                                     tttttATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTcc                                                                                      >  2:574835/1‑141 (MQ=255)

                                                          ataATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGc                                                                                 >  1:573794/1‑141 (MQ=255)

                                                          ataATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGc                                                                                 <  2:582574/141‑1 (MQ=255)

                                                           taATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGcc                                                                                >  4:100583/1‑141 (MQ=255)

                                                             aTTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTg                                                                              <  1:225379/141‑1 (MQ=255)

                                                              ttGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGt                                                                             >  1:502280/1‑141 (MQ=255)

                                                               tGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTa                                                                            >  1:609365/1‑141 (MQ=255)

                                                               tGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTa                                                                            >  1:538046/1‑141 (MQ=255)

                                                                gTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAg                                                                           <  2:776846/141‑1 (MQ=255)

                                                                gTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAg                                                                           <  1:376467/141‑1 (MQ=255)

                                                                gTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAg                                                                           <  4:184263/141‑1 (MQ=255)

                                                                gTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTACCACCCCAACTTCCATTTCCTGTAg                                                                           <  2:91075/141‑1 (MQ=255)

                                                                   aaTTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGaaa                                                                        <  1:721679/141‑1 (MQ=255)

                                                                      tAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTg                                                                     <  2:585693/141‑1 (MQ=255)

                                                                        ggggAGAGATGATACTTACACAGTTAGTTATCTATTTGACGGATAGTGACATTTATTTGGAGTGAGGGGGGACAGAGATGATAATTTCGCAAGAGTTATTTCGGAGTCCCACCCCAACTTCCATTGCCTGTGGAGACTGGa                                                                   >  2:398551/1‑141 (MQ=255)

                                                                         gggAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACACCATCTTCCATTGCCTGTAGAAATTGGaa                                                                  <  2:141938/141‑1 (MQ=255)

                                                                          ggAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGaaa                                                                 >  4:41359/1‑141 (MQ=255)

                                                                           gagagaTGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAAt                                                                <  1:184793/141‑1 (MQ=255)

                                                                            agagaTGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATc                                                               >  4:3087/1‑141 (MQ=255)

                                                                                 tgatACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAAtt                                                          >  2:505330/1‑141 (MQ=255)

                                                                                  gatACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGACATCCAAttt                                                         <  1:801530/141‑1 (MQ=255)

                                                                                    tACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGCAATTGGAAATCCAATTtct                                                       >  1:392626/1‑141 (MQ=255)

                                                                                        tAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTAt                                                   <  3:86719/141‑1 (MQ=255)

                                                                                         aaaTAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATg                                                  >  2:432185/1‑141 (MQ=255)

                                                                                         aaaTAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATg                                                  <  1:373615/141‑1 (MQ=255)

                                                                                          aaTAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGt                                                 <  1:811370/141‑1 (MQ=255)

                                                                                           aTAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGtt                                                <  1:739631/141‑1 (MQ=255)

                                                                                           aTAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGtt                                                <  1:24007/141‑1 (MQ=255)

                                                                                              gttagttaTTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTggg                                             <  1:416837/141‑1 (MQ=255)

                                                                                                  gttaTTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGccc                                         >  1:620133/1‑141 (MQ=255)

                                                                                                   ttatttatTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGcccc                                        <  1:319154/141‑1 (MQ=255)

                                                                                                    tatttattTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTTGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGcccca                                       <  3:147709/141‑1 (MQ=255)

                                                                                                    tatttattTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGcccca                                       >  4:298004/1‑141 (MQ=255)

                                                                                                        tatttTACGGATAGTGAAATTTATTTTGAGTGAGTTTTGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCTACTTCTATTGCCTGTAGAAATTTTAAATCCAATTTATCTATATTGGCGtccctcacc                                   >  2:70185/1‑136 (MQ=18)

                                                                                                            ttACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACt                               >  1:873105/1‑141 (MQ=255)

                                                                                                            ttACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACt                               >  1:873294/1‑141 (MQ=255)

                                                                                                             tACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACtt                              <  2:836510/141‑1 (MQ=255)

                                                                                                             tACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTGTCGCAAAATGTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAACTCCAATTTCTCTATGTTGGGGCCCCACGCCAAcgt                              <  2:682506/141‑3 (MQ=255)

                                                                                                              aCGGATATTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTg                             >  3:310572/1‑141 (MQ=255)

                                                                                                              aCGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTg                             >  2:385453/1‑141 (MQ=255)

                                                                                                                ggATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCCCCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCa                           <  1:229269/141‑1 (MQ=255)

                                                                                                                ggATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCa                           <  1:905665/141‑1 (MQ=255)

                                                                                                                  aTAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCAtt                         <  4:357998/141‑1 (MQ=255)

                                                                                                                  aTAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCAtt                         >  2:413078/1‑141 (MQ=255)

                                                                                                                   tAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCGGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTg                        >  3:302832/1‑141 (MQ=255)

                                                                                                                     gTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGcc                      >  1:440309/1‑141 (MQ=255)

                                                                                                                      tGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCt                     >  2:87649/1‑141 (MQ=255)

                                                                                                                       gAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTg                    <  1:526755/141‑1 (MQ=255)

                                                                                                                         aaTTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTa                  >  3:330408/1‑141 (MQ=255)

                                                                                                                          atttatttTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGGCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCGCAACTTGCATTGCCTGTAg                 <  4:213930/141‑1 (MQ=255)

                                                                                                                          atttatttTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAg                 <  3:392192/141‑1 (MQ=255)

                                                                                                                          atttatttTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAg                 <  2:502280/141‑1 (MQ=255)

                                                                                                                             tatttTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATGTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCNGTCGaga              >  2:684199/1‑139 (MQ=255)

                                                                                                                             tatttTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCATGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGaaa              <  1:666634/141‑1 (MQ=255)

                                                                                                                             tattatGAGGGAGGTCGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTAGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGaaa              <  2:776049/141‑1 (MQ=255)

                                                                                                                               ttttGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAAtt            <  4:304486/141‑1 (MQ=255)

                                                                                                                                 ttGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTgg          >  2:102959/1‑141 (MQ=255)

                                                                                                                                   gagtgatGTGCGACAGAAATGATATTTTCGCAAACTTTATTTCGTCGTCCCACCCCAACTTCCATGGCCTGTCGAAATTGGAAGTCTAATTTCTCTATCTTTGGGCCCCACCCCACCTTGCATTGCCTGTAAAAACCGgga        >  4:154430/1‑141 (MQ=17)

                                                                                                                                   gagtgagGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGgga        >  2:499651/1‑141 (MQ=255)

                                                                                                                                   gagtgagGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGgga        >  1:75114/1‑141 (MQ=255)

                                                                                                                                    agtgagGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGCAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTCACTGTAGAATTTGggag       >  2:623458/1‑141 (MQ=255)

                                                                                                                                        agGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTggctcctcc   <  1:311513/141‑8 (MQ=255)

                                                                                                                                        agGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTggctcctcc   <  1:311539/141‑8 (MQ=255)

                                                                                                                                         ggTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGcc  <  1:251394/141‑1 (MQ=255)

                                                                                                                                         ggTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGcc  <  1:838327/141‑1 (MQ=255)

ACCAGTATGACAGACAACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCC  >  USA300TCH1516_ALE/855491‑855768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.