New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1695023 =	85 (0.770)	3 (0.040) +ATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATT	3/170	13.0	4.9%	intergenic (‑229/+301)	hemN_1/lepA	Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR/Elongation factor 4
	?	USA300TCH1516_ALE	2830190 =	104 (0.940)					intergenic (+18/+429)	icaC/lipA_2	putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAATATTTATTCTTGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTT  >  USA300TCH1516_ALE/1694883‑1695159                                                                                                                                             |                                                                                                                                         tAATATTTATTCTTGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAg                                                                                                                                          <  1:256077/141‑1 (MQ=255)  aaTATTTATTCTTGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAgg                                                                                                                                         <  2:45154/141‑1 (MQ=255)          ttCTTGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAACCTCATGCATAAGGGAGTGGGa                                                                                                                                 <  2:360694/141‑1 (MQ=255)          ttCTTGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGa                                                                                                                                 <  2:360695/141‑1 (MQ=255)           tCTTGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGAc                                                                                                                                <  2:819316/141‑1 (MQ=255)              tGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGa                                                                                                                             <  1:685296/141‑1 (MQ=255)              tGTTTAGAGGGAGTGAAATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGATCTTACACATTAGCCAGATGTAAAAAAAAAAAAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGa                                                                                                                             <  4:233031/141‑1 (MQ=25)                 ttAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAAt                                                                                                                          <  1:630823/141‑1 (MQ=255)                      gggAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGatat                                                                                                                     >  2:252985/1‑141 (MQ=255)                      gggAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGatat                                                                                                                     >  2:527721/1‑141 (MQ=255)                        gAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATAttt                                                                                                                   >  1:49585/1‑141 (MQ=255)                            gagaTAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGc                                                                                                               >  1:593535/1‑141 (MQ=255)                              gaTAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCaa                                                                                                             <  2:410366/141‑1 (MQ=255)                                tAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCaaaa                                                                                                           >  2:260093/1‑141 (MQ=255)                                  gAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAatt                                                                                                         <  1:142219/141‑1 (MQ=255)                                  gAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAatt                                                                                                         <  4:322693/141‑1 (MQ=255)                                  gAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACGCATGCATAAGGGGGTGGGACAGAAATGATATTTTCGCAAAatt                                                                                                         <  2:353417/141‑1 (MQ=255)                                       aataaAGAACCACTCATGATTTCTTATGTAGTGGCTCTTACACATCAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTACGCAAAatttattt                                                                                                    >  2:133308/1‑141 (MQ=255)                                       aataaAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAatttattt                                                                                                    >  1:776352/1‑141 (MQ=255)                                            aGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcgtcg                                                                                               >  1:461346/1‑141 (MQ=255)                                            aGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcgtcg                                                                                               >  2:412006/1‑141 (MQ=255)                                              aaCCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCgtcgtc                                                                                             >  2:201441/1‑141 (MQ=255)                                               aCCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTcc                                                                                            >  2:833476/1‑141 (MQ=255)                                                ccACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGt                                                                                                                                     <  2:861852/99‑1 (MQ=255)                                                ccACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGt                                                                                                                                     >  1:861852/1‑99 (MQ=255)                                                 cACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCa                                                                                          >  2:652619/1‑141 (MQ=255)                                                 aaCTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCa                                                                                          >  3:300399/2‑141 (MQ=255)                                                  aCTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAc                                                                                         >  2:656733/1‑141 (MQ=255)                                                  aCTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAc                                                                                         >  2:263251/1‑141 (MQ=255)                                                     aaTGATTTATTATGTAGTGGCTCTTACACATTAGTTAAATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCNAcccc                                                                                      >  1:256670/1‑141 (MQ=255)                                                      aTGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCa                                                                                     <  1:445482/141‑1 (MQ=255)                                                          tttATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACtt                                                                                 <  2:886259/141‑1 (MQ=255)                                                          tttATTATGGAGGGTCTGTTACACAGTATCCTTATCTAAGATTTGCTTATGAAGAAAATTACATGATTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACtt                                                                                 <  1:83036/141‑1 (MQ=18)                                                            tattatGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGc                                                                               >  1:378434/1‑141 (MQ=255)                                                            tattatGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGc                                                                               <  3:365499/141‑1 (MQ=255)                                                             attatGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCa                                                                              <  1:304554/141‑1 (MQ=255)                                                                       ggCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAg                                                                    >  2:700580/1‑141 (MQ=255)                                                                        gCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGa                                                                   <  3:86843/141‑1 (MQ=255)                                                                          tctTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAAt                                                                 >  1:521248/1‑141 (MQ=255)                                                                             tACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTc                                                              >  2:861419/1‑141 (MQ=255)                                                                              acacATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCt                                                             >  1:207970/1‑141 (MQ=255)                                                                               cacaTTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCtt                                                            >  1:752947/1‑141 (MQ=255)                                                                               cacaTTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATGTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCtt                                                            >  1:638191/1‑141 (MQ=255)                                                                                 caTTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTAGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCtttt                                                          <  4:99716/141‑1 (MQ=255)                                                                                   ttAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCg                                                        <  1:571324/141‑1 (MQ=255)                                                                                        cAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAAtt                                                   >  1:354182/1‑141 (MQ=255)                                                                                         aGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATtc                                                  >  4:104548/1‑141 (MQ=255)                                                                                          gATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTTGAGAAGTTCTTTTCGAAATtct                                                 <  2:461346/141‑1 (MQ=255)                                                                                          gATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATtct                                                 <  2:636747/141‑1 (MQ=255)                                                                                           aTGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATtctc                                                <  2:117356/141‑1 (MQ=255)                                                                                            tGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCTTGCATTGCCTGTAGAATTTCTTTTCGAAATTctct                                               >  2:570127/1‑141 (MQ=255)                                                                                                atatGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGt                                           >  2:425558/1‑141 (MQ=255)                                                                                                  atGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTg                                         >  2:34230/1‑141 (MQ=255)                                                                                                  atGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGCGGGACAGAAATGATATCTTCGTAAACTTTCTACAGTTGTCCAACCTCAACTTGCATTGCCTGTACAATTTCTACTCGAAATTCTCCATGTTg                                         >  1:456134/1‑141 (MQ=25)                                                                                                    gTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTggg                                       <  2:755391/141‑1 (MQ=255)                                                                                                     tCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTgggg                                      >  2:409563/1‑141 (MQ=255)                                                                                                      ccTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAc                                                                                         <  2:421597/89‑1 (MQ=255)                                                                                                      ccTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAc                                                                                         >  1:421597/1‑89 (MQ=255)                                                                                                       cTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGcc                                    >  3:362756/1‑141 (MQ=255)                                                                                                        ttAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCGCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccc                                   <  1:540164/141‑1 (MQ=255)                                                                                                        ttAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccc                                   >  4:118952/1‑141 (MQ=255)                                                                                                        ttAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccc                                   <  1:652619/141‑1 (MQ=255)                                                                                                          aaaaaTAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGcccca                                 <  1:26508/141‑1 (MQ=255)                                                                                                          aaaaaTAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGcccca                                 <  1:524966/141‑1 (MQ=255)                                                                                                           aaaataaaatTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccac                                <  2:768826/141‑1 (MQ=255)                                                                                                                 aaatTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAAc                          <  2:359467/141‑1 (MQ=255)                                                                                                                  aatTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACt                         <  4:66427/141‑1 (MQ=255)                                                                                                                  aatTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACt                         <  1:252985/141‑1 (MQ=255)                                                                                                                  aatTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACt                         <  1:93543/141‑1 (MQ=255)                                                                                                                  aatTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACt                         <  1:700580/141‑1 (MQ=255)                                                                                                                   atTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAACCTCTCTATGTTGGGGCCCCACCCCAACtt                        >  2:202508/1‑141 (MQ=255)                                                                                                                   atTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACtt                        <  1:699682/141‑1 (MQ=255)                                                                                                                   atTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTCTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACtt                        >  2:811282/1‑141 (MQ=255)                                                                                                                     tACATTACTAAAACTCATGCATAATGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGc                      <  2:634704/141‑1 (MQ=255)                                                                                                                           agttttaCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGCGCCCCACCCCAACTTGCACATta                >  4:380493/7‑141 (MQ=255)                                                                                                                              tttaCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAg             >  1:3630/4‑141 (MQ=255)                                                                                                                                aaCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTa           >  1:787331/1‑141 (MQ=255)                                                                                                                                 aCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCCCCCCAACTTGCACATTATAGTaa          >  2:750114/1‑141 (MQ=255)                                                                                                                                    cATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCt       >  2:327191/1‑141 (MQ=255)                                                                                                                                     aTGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTg      >  3:253392/1‑141 (MQ=255)                                                                                                                                      tGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGa     >  1:577466/1‑141 (MQ=255)                                                                                                                                      tGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGa     <  4:11981/141‑1 (MQ=255)                                                                                                                                       gCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTGTTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATCGTAGGCttcc    >  2:33283/1‑138 (MQ=255)                                                                                                                                       gCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTGTTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGAc    >  3:154902/1‑141 (MQ=255)                                                                                                                                         aTAAGGGAGTGGGACAGAAATGATATTTTTTTTTTTTTTTTTTCGTCGTCACACCCCAAATTGCATTGCCTGTAGAATTTCTTTTCGAAATTTTTTATTTTGCGGCCCCACCCCAACTTGCACATTATAGTAAGCTGAttt  >  4:390519/1‑141 (MQ=17)                                                                                                                                             |                                                                                                                                         TAATATTTATTCTTGTTTAGAGGGAGTGAGATAGAAATAATAAAGAACCACTAATGATTTATTATGTAGTGGCTCTTACACATTAGCCAGATGTAATATGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTT  >  USA300TCH1516_ALE/1694883‑1695159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.