New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 2264 =388 (1.070)10 (0.010) 4/238 NT 1.5% intergenic (+44/+124) USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004 hypothetical protein/hypothetical protein
?NC_012417 2053 = 958 (0.820)intergenic (+286/+40) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 110 total aligned reads displayed.

TTTGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000731/2414‑2264
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttaagggttcCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTT  >  NC_012417/2053‑2192
                                                                                                                                                                                                                                                                                                          
TTTGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑G                                                                                                                                                        >  1:250382/1‑141
 TTGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GT                                                                                                                                                       <  2:784734/141‑1
 TTGCAGCGGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GT                                                                                                                                                       <  2:56496/141‑1
  TGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACACTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCCAGT‑TT‑‑‑‑A‑‑GTT                                                                                                                                                      >  2:175594/1‑141
   GCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTCTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTA                                                                                                                                                     <  2:874487/141‑1
    CAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAA                                                                                                                                                    <  1:428314/141‑1
    CAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAA                                                                                                                                                    >  1:289561/1‑141
     cGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACAGTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAG                                                                                                                                                   <  1:490493/140‑1
     AGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGGGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAG                                                                                                                                                   >  1:265568/1‑141
     AGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCTTTAACAATCCCGAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAG                                                                                                                                                   >  2:851773/1‑141
     AGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAG                                                                                                                                                   >  1:92388/1‑141
     AGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAG                                                                                                                                                   <  1:514773/141‑1
     AGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAG                                                                                                                                                   >  2:631494/1‑141
      gcgGGATGCGCTGGAGGGTGATTTTATTCCAATTGTTTTATTGACGTGGAGCCTCGTAACCCTTAACAACCCCAAAACTTGTGGAATGGTGGGGTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGG                                                                                                                                                  <  2:779144/138‑1
      GCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGG                                                                                                                                                  <  1:562624/141‑1
      GCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGG                                                                                                                                                  >  1:70953/1‑141
      GCTGGATCCTCTGTAGGTTTATTTTATTCCAATTGTTTTATCGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTTTGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGG                                                                                                                                                  <  1:426265/141‑1
       CTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGG                                                                                                                                                 <  2:831048/141‑1
       CTGGATGCTCTGTAGGTTGATTTTACTCCAATTGTTTTATTGACATTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGG                                                                                                                                                 >  1:516431/1‑141
        gGGATGCTCGGTAGGTTGGTTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGT                                                                                                                                                <  1:412329/140‑1
        TGGATGCTCTTTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATACGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGT                                                                                                                                                <  1:417337/141‑1
        TGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGTTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGT                                                                                                                                                <  2:248706/141‑1
        TGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGT                                                                                                                                                <  1:860313/141‑1
        TGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGT                                                                                                                                                >  1:652370/1‑141
        TGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGT                                                                                                                                                >  2:421427/1‑141
         ggcTGCTTTGTAGGTTGATTTTGTTCCAATTGTTGTATTGACGTTGAGCCTCGGTACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGTCATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTACGGGTT                                                                                                                                               <  2:775100/138‑1
         GGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGTT                                                                                                                                               >  1:231633/1‑141
         GGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGTT                                                                                                                                               <  1:508737/141‑1
          GATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGTTC                                                                                                                                              >  2:603462/1‑141
          GATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGTTC                                                                                                                                              <  1:194067/141‑1
            TGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGTactt                                                                                                                                            >  2:662928/1‑137
                           TTTTATTCCAATGGTTTTATCGACGTTGAGGCGCGGAACCCTTAACAATCCCAAACCTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGTTCCGAGGCTCAACGTCAAT                                                                                                                             <  2:597265/141‑1
                                                                     TAACAATCCCAAAACTTTTCGAAGGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGTTC‑‑‑TTCTCAACATCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGA                                                                                <  2:332280/141‑1
                                                                           TCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGTAATAAATAGTATCTAAAGTGACCCGTATTTA                                                                                   >  1:791743/1‑141
                                                                             CCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACA                                                                           >  2:370278/1‑141
                                                                                       TCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTATTGGA‑ATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGT                                                                       >  1:451178/1‑141
                                                                                       TCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGT                                                                       >  2:608883/1‑141
                                                                                       TCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGT                                                                       >  2:706390/1‑141
                                                                                           ATGGTCGGCTGAATAGCTCCCTCTAAGCCGACATTCGTTTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGTTCCGAGGCACAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCG                                                             <  2:185804/141‑1
                                                                                             GGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCC                                                                 >  1:897107/1‑141
                                                                                                                                                   GTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTT            <  1:934113/141‑1
                                                                                                                                                   GTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTT            >  1:364267/1‑141
                                                                                                                                                    ggAAGGGTTCCGAGGCCCAACGTCAATAAAGCAATTGGAATAAAGAGTATCTGAAGTAACCCGTATTTAAGATTACATTGTACATCCTGCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTA           <  1:311736/139‑1
                                                                                                                                                    TTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGTTTTCCTTTTATCCCAATTTTA           <  1:482220/141‑1
                                                                                                                                                     TAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAG          <  2:481316/141‑1
                                                                                                                                                     TAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAG          >  1:752712/1‑141
                                                                                                                                                     TAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAG          >  1:169391/1‑141
                                                                                                                                                     TAAGGGTCCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAG          <  1:132351/141‑1
                                                                                                                                                      agGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGC         <  2:464592/139‑1
                                                                                                                                                      AAGGGTTCCGAGGCTCAACGTCAATAAAGCCATTGGAATGAATAGGATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGC         <  1:257268/141‑1
                                                                                                                                                      AAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTACCCTTGCAGTCGACTTCATTCCAAACCATATTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGC         <  1:221120/141‑1
                                                                                                                                                      AAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAACCCATCGTAGCGGCTATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGC         >  1:405563/1‑141
                                                                                                                                                      AAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGC         <  1:929595/141‑1
                                                                                                                                                      AAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATACCAATTTTAGC         >  2:913476/1‑141
                                                                                                                                                      AAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATATAAAGTTACCCGTATTTAAGATTACATTGTACATCCTTCGCAACCATAGTAGCGGCGATTCCAGCTAGGTGTCCTTTTATCCCAATTTTAGC         >  1:315088/1‑141
                                                                                                                                                      AAGGGTTCCGAAGCTCAATGTCAATAAAGCAATTGGAATAAATAGTATCTAACGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGC         <  1:475615/141‑1
                                                                                                                                                      AAGGCTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTGCGAAACCATAGTAGCTGCGATGCCAGCTAGGTTTCCTTTTATCCCAATTTTAGC         <  1:191183/141‑1
                                                                                                                                                       AGGGTTCCGAGTCTAAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTTGCT        <  2:261373/141‑1
                                                                                                                                                       AGGGTTCCGAGGCTCAACGTCAATCAAGCAATTTTAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCT        <  1:358006/141‑1
                                                                                                                                                       AGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTCGCT        >  1:592700/1‑141
                                                                                                                                                       AGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCT        >  1:335395/1‑141
                                                                                                                                                       AGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCT        <  2:334031/141‑1
                                                                                                                                                       AGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCT        <  2:604550/141‑1
                                                                                                                                                       AGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCT        >  2:208242/1‑141
                                                                                                                                                       AGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCT        >  2:892343/1‑141
                                                                                                                                                       AGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCT        <  1:893707/141‑1
                                                                                                                                                       AGGGTTCCGAGGCTCAACGTCAAAAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTCCCTCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCT        <  2:756788/141‑1
                                                                                                                                                       AGGGTTCCGAGGCTCAACGGCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCT        <  1:893697/141‑1
                                                                                                                                                       AGGGTTCCGAGGCTAAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCT        <  2:629753/141‑1
                                                                                                                                                        GGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTGTCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTA       >  1:535421/1‑141
                                                                                                                                                        GGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTCTCCCCATTTTAGCTA       >  1:126288/1‑141
                                                                                                                                                        GGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTA       >  2:703119/1‑141
                                                                                                                                                        GGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTA       >  1:582023/1‑141
                                                                                                                                                        GGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTA       <  1:375523/141‑1
                                                                                                                                                        GGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTA       <  1:230303/141‑1
                                                                                                                                                        GGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTA       <  1:535674/141‑1
                                                                                                                                                        GGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTA       <  1:796655/141‑1
                                                                                                                                                        GGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTA       >  1:849143/1‑141
                                                                                                                                                        GGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTA       <  2:140053/141‑1
                                                                                                                                                        GGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATCTTAGCTA       >  1:56872/1‑141
                                                                                                                                                        GGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGGATGTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTA       >  1:429405/1‑141
                                                                                                                                                        GGGTGCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTA       <  1:161811/141‑1
                                                                                                                                                         GGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCACTTTTAGCTAA      >  2:143574/1‑141
                                                                                                                                                         GGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAA      >  2:600909/1‑141
                                                                                                                                                         GGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAA      >  1:381426/1‑141
                                                                                                                                                         GGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAA      >  1:530440/1‑141
                                                                                                                                                         GGTTCCGAGGCTCAACGTAAATAAATCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAA      <  1:480902/141‑1
                                                                                                                                                          GTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTcaa     <  2:245080/141‑4
                                                                                                                                                            TCCGAAGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACGCGTATTTAAGCTTACATTGTACATCCTGCGAAACCATAGTAGCTGCGATCCCAGCTAGGTTTCCTTTTATCCCCACTTTAGCTATTTT   >  2:272925/1‑141
                                                                                                                                                             CCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGGCCCAATAGTGGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTT  >  1:446605/1‑141
                                                                                                                                                             CCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTT  <  1:530434/141‑1
                                                                                                                                                             CCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTT  >  1:349730/1‑141
                                                                                                                                                             CCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTT  <  1:83371/141‑1
                                                                                                                                                             CCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTT  >  1:145745/1‑141
                                                                                                                                                             CCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTT  >  1:375055/1‑141
                                                                                                                                                             CCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTT  >  1:403349/1‑141
                                                                                                                                                             CCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTT  >  2:334500/1‑141
                                                                                                                                                             CCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTACCCCAATTTTAGCTAATTTT  <  1:499641/141‑1
                                                                                                                                                             CCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATGCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTACTTTT  >  2:782879/1‑141
                                                                                                                                                             CCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGAGTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTT  >  1:812021/1‑141
                                                                                                                                                                                                                                                                                                          
TTTGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGACGTTGAGCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT‑TT‑‑‑‑A‑‑GTTAAGGGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000731/2414‑2264
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttaagggttcCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTT  >  NC_012417/2053‑2192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.