New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 29371235 (0.960)14 (0.010) 7/250 NT 1.2% intergenic (‑263/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 2949 1025 (0.830)intergenic (‑275/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1525 total aligned reads displayed.

ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGT  >  NC_012417/2797‑3077
                                                                                                                                            |                                                                                                                                            
   tttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGCAACGAg                                                                                                                                           <  2:874946/141‑1 (MQ=255)
   tttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                                                                           <  1:71248/141‑1 (MQ=255)
       attttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTCATTCATTGGTTTTCACATTAACTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGtgtg                                                                                                                                       <  2:412240/141‑1 (MQ=255)
        ttttGTTAATTCGATTTTATTTGATCATACTTTTTATTTTTTATAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAATGAGTGTGa                                                                                                                                      <  2:426323/141‑1 (MQ=255)
        ttttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGa                                                                                                                                      <  1:135319/141‑1 (MQ=255)
        ttttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGAGTGa                                                                                                                                      <  2:652537/141‑1 (MQ=255)
         tttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcaca                                                                                                                                     <  2:494917‑M1/141‑10 (MQ=255)
         ttagTTAATTCGGTATAATTTGATAAACCTTTTGGCTTTTAAGAAAGGTTTATTTATTCATTGGTTTTTACATTAATTTATTTAGGTTTAGAGGGTAATAAAAAGAAGAAGGAATAGGTTGTATTTTGAAACAAGTGCGaa                                                                                                                                     >  2:77133/4‑141 (MQ=255)
           tGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAATAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                                                                   <  2:262863/141‑1 (MQ=255)
           tGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                                                                   <  2:934660/141‑1 (MQ=255)
           tGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGAAATAGGTTGTTTTTTGAAACGAGGGTGAACg                                                                                                                                   >  1:485711/1‑141 (MQ=255)
           tGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAAAAAGTTTTATTTATTCATTGGTTTTCAAATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                                                                   <  1:60371/141‑1 (MQ=255)
            tttAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGa                                                                                                                                  <  2:284703/140‑1 (MQ=255)
              tAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGCGTGTGAACGAgt                                                                                                                                >  1:665290‑M2/1‑139 (MQ=255)
              tAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgt                                                                                                                                >  1:817260‑M2/1‑139 (MQ=255)
               aaTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAAATTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTAAACGAGTGTGAACGAgtt                                                                                                                               >  1:564614‑M2/1‑138 (MQ=255)
                aTTCGATTTTATTTGATAATTCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                              >  2:718995‑M2/1‑137 (MQ=255)
                aTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                              >  2:224354‑M2/1‑137 (MQ=255)
                aTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                              >  1:380486‑M2/1‑137 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  1:369730/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  2:15390/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  1:89395/141‑1 (MQ=255)
                    caTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  1:528313/140‑1 (MQ=255)
                     tttttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                                                                         <  2:275649/140‑1 (MQ=255)
                     aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                                                                         <  2:482170/141‑1 (MQ=255)
                      ttttttttGTTTATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                        <  2:835507/141‑1 (MQ=255)
                      ttttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                        <  2:680393/141‑1 (MQ=255)
                      ttttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                        <  1:167350/141‑1 (MQ=255)
                       ttttttTGATAATACGTTTGATTTTTTAGAAAGTTTTATTTATTCATTTGTTTTCACATTAATTTATTTAGGTTGAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:538889/141‑1 (MQ=39)
                       tttATTTGATAATCCTTTTGGCTTTTTAGATAGTTTTATTTATTAATTGGCTTTTATATTAATGTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTGTTGAAACGGGTGTGGTCGGGTGTCTtcttg                                                                                                                       <  2:437230/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:325320/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAAGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:790030/141‑1 (MQ=255)
                        ttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                                                                      <  1:873889/141‑1 (MQ=255)
                        ttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                                                                      <  2:914234/141‑1 (MQ=255)
                        ttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                                                                      <  1:513499/141‑1 (MQ=255)
                         tATTTGATAATCCGTTTGACTTTTTAGAAAGGTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGACATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:929136/141‑1 (MQ=255)
                          aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                                                                    <  1:584811/141‑1 (MQ=255)
                             tGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGTATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGa                                                                                                                 >  1:694967/1‑141 (MQ=255)
                               aTAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATa                                                                                                               >  1:833378/1‑141 (MQ=255)
                                  aTCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGATTCTAGTTTGAACGAGTTTCTtcttgtattgttcctt                                                                                                            >  2:81246/1‑135 (MQ=255)
                                     cTTTTGACATTTTAGAAAATTATAATTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACtatat                                                                                                         <  1:10004/141‑1 (MQ=255)
                                      ttttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTCCACAGTTATTTATTTAGGTCTAGATGGCCAGAAAAAGAACAATGAACAGGTGGTTTTTTGAAACGAATGTAAACTTGTTGCTTCTTGTCTTtatattatatc                                                                                                        <  2:237860/141‑2 (MQ=255)
                                       tttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAg                                                                                                       >  2:168552/1‑141 (MQ=255)
                                        ttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGa                                                                                                      <  1:99151/141‑1 (MQ=255)
                                        ttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGa                                                                                                      <  1:544218/141‑1 (MQ=255)
                                        ttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGACCTGGTAAGCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGa                                                                                                      >  1:306340/1‑141 (MQ=255)
                                         tGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaa                                                                                                     <  2:355932/141‑1 (MQ=255)
                                          gACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaaa                                                                                                    >  1:848580/1‑141 (MQ=255)
                                          gACTTTTTAGAAAGTTTTATTTATGCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaaa                                                                                                    <  2:666314/141‑1 (MQ=255)
                                           aCTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAAt                                                                                                   >  2:863331/1‑141 (MQ=255)
                                            ttttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATa                                                                                                  <  2:595179/140‑1 (MQ=255)
                                            cTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGCGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATa                                                                                                  <  2:398047/141‑1 (MQ=255)
                                            cTTTTTAGAAAGTTTTATTTATTCATTGGTTTTAACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGGAATa                                                                                                  <  1:641080/141‑1 (MQ=255)
                                             tttttAGAAAGTTTTATTTATTCATTTGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATaa                                                                                                 <  1:619737/141‑1 (MQ=255)
                                              ttttAGAAAGTTTTATTTATTCCTTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                <  2:896048/141‑1 (MQ=255)
                                              ttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                <  2:212236/141‑1 (MQ=255)
                                              ttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                <  1:772802/141‑1 (MQ=255)
                                               tttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                                                                               >  1:911901/1‑141 (MQ=255)
                                                   gAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAt                                                                                           <  1:275039/141‑1 (MQ=255)
                                                      aGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGACGGAATAGGTTGTGTTGTGAAACGAGGGTGTACGAGTTTGTTCTTGTCTTGATCCTATATAGAAATAGCTCGAtttt                                                                                        >  1:33474/1‑141 (MQ=255)
                                                      aGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtttt                                                                                        <  2:182077/141‑1 (MQ=255)
                                                      aGTTTTATTTATTCATTGGTTGTCACATTAATTTAGTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGCGTTTCTTCTTGTCTTGATACTATATAGAAAAAACTCGGttct                                                                                        >  1:417960/1‑139 (MQ=39)
                                                      aGTTTTATTTAGTCATTGGGTTTAACATTAATGTATTTAGGTTTAGAGGGTCATAAATAGAAGAAGGAATTGGTTGTTTTTTGAGCCGTGTGTAATCGAGGTTCTGCTTTTATTCATCTGATGTATAAGCAACTCGAtttt                                                                                        >  2:568249/1‑141 (MQ=255)
                                                       gTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATATCTCGATTTta                                                                                       <  2:637402/141‑1 (MQ=255)
                                                       gTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTta                                                                                       >  1:465081/1‑141 (MQ=255)
                                                       gTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTta                                                                                       <  1:120165/141‑1 (MQ=255)
                                                       gTTTTATTTATTCATTGGTTTTCAATTTAATTTATTTTGGTTTCGAAGCTTATGAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTta                                                                                       <  1:681390/141‑1 (MQ=38)
                                                        ttttATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtat                                                                                      >  1:246674/1‑141 (MQ=255)
                                                             tttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtctatata                                                                                 >  1:497849/1‑141 (MQ=255)
                                                                cttCATTTGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAg                                                                              <  1:210548/140‑1 (MQ=255)
                                                                   taTTGGTTTTTACATTAATTTATTTAGTTTTAGAGGGTCATAAAAAGAATAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTg                                                                           <  2:736677/140‑1 (MQ=255)
                                                                    aTTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGGTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGt                                                                          >  2:120410/1‑141 (MQ=255)
                                                                          tttCACATTAATTTATTGAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTAATAACAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGt                                                                    <  1:447989/141‑1 (MQ=39)
                                                                              acaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGat                                                                >  1:753603/1‑141 (MQ=255)
                                                                                   aaTTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATCTAGCTGTAACTGTTGAGATTaa                                                           >  1:785925/1‑140 (MQ=255)
                                                                                       tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTAGAgtg                                                       >  1:196813/1‑141 (MQ=255)
                                                                                       tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtg                                                       >  1:475822/1‑141 (MQ=255)
                                                                                        atttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGACACGAGTGTGAACGAGCTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtgt                                                      >  1:221048/1‑141 (MQ=255)
                                                                                              gTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAAc                                                >  2:311742/1‑141 (MQ=255)
                                                                                                   gagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTTTTTAAACGTGtt                                           >  1:436490/1‑141 (MQ=255)
                                                                                                   gagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtt                                           <  2:338521/141‑1 (MQ=255)
                                                                                                       gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                       <  1:804369/141‑1 (MQ=255)
                                                                                                        tCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtgt                                      >  1:393820/1‑141 (MQ=255)
                                                                                                            aaaaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGt                                  <  2:19972/141‑1 (MQ=255)
                                                                                                               aagaataaagaataGGTTGTTTTTTGAAACGAGTGTGACTGAGTTTCTTTTTTTCTTGAGACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGaa                               <  2:467905/141‑1 (MQ=255)
                                                                                                               aagaagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAAGGTGTTTTTGTGGGTGaa                               >  2:608098/1‑141 (MQ=255)
                                                                                                                agaagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGaaa                              >  2:556248/1‑141 (MQ=255)
                                                                                                                         aaTAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAAttt                     <  2:578852/141‑1 (MQ=255)
                                                                                                                             ggTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGATATAACTAGTTTTTATATATGTAGCTGTAACTGTTGATATTACAGTGTTTCAAGTTGTTTTGGTTCGGAGAAGGAAAATTTGACa                 >  2:376222/1‑141 (MQ=25)
                                                                                                                                  ttttttGAAACGAGGTGGAACGAGTTTCTTTTTTTCTTGATAGTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaa            <  2:513937/141‑1 (MQ=255)
                                                                                                                                       tGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAcc       <  2:697535/141‑1 (MQ=255)
                                                                                                                                       tGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAcc       <  1:736548/141‑1 (MQ=255)
                                                                                                                                       agtatctcgttcacactcttttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcga       <  2:84921‑M1/136‑136 (MQ=255)
                                                                                                                                        gAAACtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaa      >  1:862691‑M1/1‑5 (MQ=255)
                                                                                                                                         aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaat     >  1:286635‑M1/1‑4 (MQ=255)
                                                                                                                                         aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaat     >  2:754666‑M1/1‑4 (MQ=255)
                                                                                                                                         aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaat     >  2:139118‑M1/1‑4 (MQ=255)
                                                                                                                                          aaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaatt    >  1:318516‑M1/1‑3 (MQ=255)
                                                                                                                                          aaCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCa    <  1:720752/141‑1 (MQ=255)
                                                                                                                                            cGAGTGTGAACGAGTTTCTTCTTGTCTTGCTACTATATAGAAATAACTCGATTTTGTATATATAGCTTTAACTGTTGATATTACAGTGTTTAACCGTGTTTTTGGGCGTGAAAGGAGAATTTGACAATAAAAAAACCCGGt  >  1:258765/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGT  >  NC_012417/2797‑3077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.