BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 2937	1235 (0.960)	14 (0.010)	7/250	NT	1.2%	intergenic (‑263/–)	USA300HOU_RS14900/–	hypothetical protein/–
*	?	NC_012417	= 2949	1025 (0.830)	14 (0.010)	7/250	NT	1.2%	intergenic (‑275/–)	USA300HOU_RS14900/–	hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1351 total aligned reads displayed.

GTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAG  >  NC_012417/2809‑3089

    aTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTTTTTTTTGAAACG‑AGTGTGAACGAgttt                                                                                                                                          >  1:455226‑M2/1‑137 (MQ=255)

    aTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACAAGatt                                                                                                                                          >  2:60709/1‑141 (MQ=255)

     ttCGATTTTATTTGATAATCCTTTTTACTTTTTAGAAAGTGTTATTTATTCATTGGTTTTCACATTAATGTATTTCGGTTTAGAGGGTCATAAAAAGTAGAAGGAGTTGGTTGTTTTTTGAATCG‑AGTGTGAACGAGTttc                                                                                                                                         <  2:460039/141‑1 (MQ=255)

      tCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTttct                                                                                                                                        <  1:763984/141‑1 (MQ=255)

      tCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTttct                                                                                                                                        <  2:363664/141‑1 (MQ=255)

      tCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTttct                                                                                                                                        <  2:730493/141‑1 (MQ=255)

       cGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTttctt                                                                                                                                       <  1:388489/141‑1 (MQ=255)

        gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAACAAGAAGAATGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTttcttc                                                                                                                                      <  2:811567/141‑1 (MQ=255)

        gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTttcttc                                                                                                                                      <  1:630549/141‑1 (MQ=255)

         attttattttATAATCCTTTTTACGTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTtcttct                                                                                                                                     <  2:435803/141‑1 (MQ=255)

         aTTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAACAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTtcttct                                                                                                                                     <  2:834437/141‑1 (MQ=255)

          ttttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTCTTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTcttctt                                                                                                                                    <  1:23445/141‑1 (MQ=255)

          tttgatttgaTAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTcttctt                                                                                                                                    <  2:423127/141‑1 (MQ=255)

           ttttttTGATAATACGTTTGATTTTTTAGAAAGTTTTATTTATTCATTTGTTTTCACATTAATTTATTTAGGTTGAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttg                                                                                                                                   <  2:538889/141‑1 (MQ=39)

           tttATTTGGTAATCCTTTTGTCTTTTTAGAATGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAAGTTTAGAGGGTCATAAAAAGAGGACAGTATAGGTTGTTTTTTGGAACG‑AGTGTGAACGAGTTTCTtcttg                                                                                                                                   <  2:501635/141‑1 (MQ=255)

           tttATTTGATAATCCTTTTGACTTTTTAGTAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGCAACG‑AGTGTGAACGAGTTTCTtcttg                                                                                                                                   <  2:789905/141‑1 (MQ=255)

           tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTttctaaatc                                                                                                                                   <  2:10033/141‑6 (MQ=255)

           tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttg                                                                                                                                   <  2:137955/141‑1 (MQ=255)

           tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACAATAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttg                                                                                                                                   <  1:731412/141‑1 (MQ=255)

            ttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttgt                                                                                                                                  <  1:376223/141‑1 (MQ=255)

            ttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttgt                                                                                                                                  <  1:55787/141‑1 (MQ=255)

            ttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttgt                                                                                                                                  <  1:873889/141‑1 (MQ=255)

            ttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttgt                                                                                                                                  <  2:265557/141‑1 (MQ=255)

             tATTTGATAATTCTTTTCACTTTTTAGAAATTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGATAGTCATAAAAAGAATAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGATTTTCTtcttgtc                                                                                                                                 <  2:319597/141‑1 (MQ=255)

             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAGAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 <  1:611987/141‑1 (MQ=255)

             tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttgtc                                                                                                                                 >  1:134590/1‑141 (MQ=255)

              ttttGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGCGTCATAACAAGCAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttgtct                                                                                                                                <  2:707308/140‑1 (MQ=255)

              aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttgtct                                                                                                                                <  1:594523/141‑1 (MQ=255)

              aTTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttgtct                                                                                                                                <  1:745917/141‑1 (MQ=255)

               tttGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCAAATAAATTTATTTAGGTTGAGATGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttgtctt                                                                                                                               >  1:930496/1‑141 (MQ=255)

                ttGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttgtcttg                                                                                                                              <  2:746030/141‑1 (MQ=255)

                 tGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAATG‑AGTGTGAACGAGATTCTTCTTGGCTTGa                                                                                                                             >  2:769891/1‑141 (MQ=255)

                 tGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTtcttgtcttgt                                                                                                                             >  2:27991/1‑140 (MQ=255)

                      aTCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACta                                                                                                                        >  1:25217/1‑141 (MQ=255)

                        ccTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACtata                                                                                                                      <  2:405666/141‑1 (MQ=255)

                         cTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACtatat                                                                                                                     <  1:835050/141‑1 (MQ=255)

                         cTTTTGACATTTTAGAAAATTATAATTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACtatat                                                                                                                     <  1:10004/141‑1 (MQ=255)

                           tttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTGGAGGGTCATAAAACGAAGAAGGAATAGGTTGTTGTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAg                                                                                                                   >  1:895289/1‑141 (MQ=255)

                           tttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGGTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑ATTGTGAACGAGTTTCTTCTTGTCTTGCTACTATATAg                                                                                                                   >  2:470813/1‑141 (MQ=255)

                            ttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGa                                                                                                                  <  1:659816/141‑1 (MQ=255)

                            ttGACTTTTTAGAAAGGTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGa                                                                                                                  <  1:52245/141‑1 (MQ=255)

                             tGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaa                                                                                                                 <  1:86287/141‑1 (MQ=255)

                              gACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaaa                                                                                                                >  1:848580/1‑141 (MQ=255)

                              gACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTAGATACTATATAGaaa                                                                                                                <  1:701614/141‑1 (MQ=255)

                               aCTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGTTACTATATAGAAAt                                                                                                               <  1:491702/141‑1 (MQ=255)

                                  ttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                            <  2:212236/141‑1 (MQ=255)

                                  ttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                            <  1:348713/141‑1 (MQ=255)

                                   tttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                                                                                           >  1:911901/1‑141 (MQ=255)

                                   tttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                                                                                           <  2:1513/141‑1 (MQ=255)

                                   tttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                                                                                           <  2:593722/141‑1 (MQ=255)

                                          cgttatctttattCATTGGTTCTCACATTAATTTAAATAGGTATAGAGGGTCATAAATCGCAGAAGGAATAGGTTGTAATTTCACACG‑TGTGAGAACTAGATTATTCTTGTCTTGATCGTATATAGAAATAACTCGAtttt                                                                                                    >  2:332525/8‑141 (MQ=255)

                                          aGTTTTATTTAGTCATTGGGTTTAACATTAATGTATTTAGGTTTAGAGGGTCATAAATAGAAGAAGGAATTGGTTGTTTTTTGAGCCG‑TGTGTAATCGAGGTTCTGCTTTTATTCATCTGATGTATAAGCAACTCGAtttt                                                                                                    >  2:568249/1‑141 (MQ=255)

                                           gTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTTAAACTATAGAGAGATGGCTCGGttgtg                                                                                                   <  2:893324/141‑4 (MQ=38)

                                           gTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATATCTCGATTTta                                                                                                   <  2:637402/141‑1 (MQ=255)

                                                ttttattCAGTGGTTTTCACATTAATTTATTTAGGTTTAGAGGTTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtatatat                                                                                              <  2:655507/140‑1 (MQ=255)

                                                 tttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTTTTTT‑TTTTTGAACGAGTTAATTCTTGTCTTGATACTATATAGGAATCACGCGATGTtattttta                                                                                             >  2:682655/1‑136 (MQ=255)

                                                 tttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtatatata                                                                                             >  2:873747/1‑141 (MQ=255)

                                                   tattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGTATAGGTTGTTTTTTTTTTTG‑TTTTTGAAAGAGTGTCTTCTTGTCTTGTTTCTATTTAGTTATCACTTGACTTtgtatttttt                                                                                           >  2:518484/1‑136 (MQ=255)

                                                   tattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtatatatata                                                                                           >  1:479197/1‑141 (MQ=255)

                                                     ttCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGc                                                                                         <  2:553957/141‑1 (MQ=255)

                                                        aTTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGGTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGt                                                                                      >  2:120410/1‑141 (MQ=255)

                                                         ttGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTa                                                                                     <  1:541188/141‑1 (MQ=255)

                                                           ggTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATAGTATATAGAAATAACTCGATTTTATATATATAGCTGTAAc                                                                                   >  1:407291/1‑141 (MQ=255)

                                                            gTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACt                                                                                  <  2:348255/141‑1 (MQ=255)

                                                             ttttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTg                                                                                 >  1:325138/1‑141 (MQ=255)

                                                              tttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTCTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGt                                                                                <  2:670826/141‑1 (MQ=255)

                                                               ttCAAATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGtt                                                                               <  2:242623/141‑1 (MQ=255)

                                                                 cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGa                                                                             >  2:912257/1‑141 (MQ=255)

                                                                 cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGa                                                                             <  1:428225/141‑1 (MQ=255)

                                                                 cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGa                                                                             <  1:214865/141‑1 (MQ=255)

                                                                  acaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGat                                                                            >  1:204102/1‑141 (MQ=255)

                                                                       aaTTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATCTAGCTGTAACTGTTGAGATTaa                                                                       >  1:785925/1‑140 (MQ=255)

                                                                         tttatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAg                                                                     <  1:181521/141‑1 (MQ=255)

                                                                              ttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGttt                                                                >  2:576008/1‑141 (MQ=255)

                                                                              ttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGttt                                                                >  2:866401/1‑141 (MQ=255)

                                                                                    ttAGAGTGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTTGTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACgt                                                          <  2:384534/141‑1 (MQ=255)

                                                                                       gagGGTCATAAAAAGACGAAGGAATAGTGTTTTTTATAACATGCAAAATGCGCATG‑TTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtt                                                       <  1:443745/141‑1 (MQ=255)

                                                                                        agGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGttt                                                      <  1:806037/141‑1 (MQ=255)

                                                                                           gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGATACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                                   >  2:937234/1‑141 (MQ=255)

                                                                                           gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                                   <  2:484829/141‑1 (MQ=255)

                                                                                           gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                                   <  1:266053/141‑1 (MQ=255)

                                                                                           gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                                   <  1:687062/141‑1 (MQ=255)

                                                                                           gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                                   <  1:678679/141‑1 (MQ=255)

                                                                                             cATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtgtg                                                 >  1:312153/1‑141 (MQ=255)

                                                                                                aaaaaGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGt                                              <  2:19972/141‑1 (MQ=255)

                                                                                                   aagaagaagGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGaa                                           <  1:46955/141‑1 (MQ=255)

                                                                                                      aagaagGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTCAACGTGTTTTTGTGCGTGAAAgg                                        <  2:226910/141‑1 (MQ=255)

                                                                                                      aagaagGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                                        <  1:819334/141‑1 (MQ=255)

                                                                                                      aagaagGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                                        <  2:848580/141‑1 (MQ=255)

                                                                                                       agaagGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGa                                       <  1:280580/141‑1 (MQ=255)

                                                                                                        gaagGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGaa                                      >  2:169270/1‑141 (MQ=255)

                                                                                                                aGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGAc                              <  1:776330/141‑1 (MQ=255)

                                                                                                                aGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGAc                              <  1:576008/141‑1 (MQ=255)

                                                                                                                 ggTTGTTTTTTGAAACG‑AGTGTGAAAGAGTTTCTTCTTGTCTGGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAGCGTGTTTTTGTGCGTGAAAGGAAAATTTGACa                             <  2:298213/141‑1 (MQ=255)

                                                                                                                   ttgttTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAAt                           <  1:508334/141‑1 (MQ=255)

                                                                                                                    tgttTTTTGCAACG‑AGTGTGACTGAGTTTCTTCTTGTCTGGATACTTTATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATa                          <  2:183193/141‑1 (MQ=255)

                                                                                                                        ttttGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaaa                      <  1:717991/141‑1 (MQ=255)

                                                                                                                               aCG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGAAAATAAAAAACCCCAg               >  1:119331/1‑141 (MQ=255)

                                                                                                                                   aGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTta            <  1:298960/141‑1 (MQ=255)

                                                                                                                                           cGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTTTAACTGTTGATACTACAGTGTTTAAACGTGTTTTTGTGCGTGAGAGGAAAATTTGCCAATAAAAAACCCCAGTTTTAgtatta    >  1:165714/1‑141 (MQ=255)

GTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACG‑AGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAG  >  NC_012417/2809‑3089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.