Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	346033	346152	120	8 [7]	[7] 8	[USA300HOU_RS01550]	[USA300HOU_RS01550]

TCATTTTTCATACTCAGCTTATTTATCATTATTATATTTGCAGTTTGGGATTTGTTTATTAGAGTTAGAAAAGGAGCGTTTGCTTTTGTTGTAATAAGGCCAATATTATTTAGTTGTTGGTTATTTATTTTGAATATGATTTTATCAAGATTATTATAATTGTATTACATATAGGTGTGGGTAAATTTTTATTTATGAAATGATAAAAAAGTATATACTATTAATATCTTTTTTACT  >  USA300TCH1516_ALE/345892‑346128                                                                                                                                             |                                                                                                 tcATTTTTCATACTCAGCTTATTTATCATTATTATATTTGCAGTTTGGGATTTGTTTATTAGAGTTAGAAAAGGAGCGTTTGCTTTTGTTGTAATAAGGCCAATATTATTTAGTTGTTGGTTATTTATTTTGAATATGAtt                                                                                                  <  1:317188/141‑1 (MQ=255)     ttttCATACTCAGCTTATTTATCATTATTATATTTGCAGTTTGGGATTTGTTTATTAGAGTTAGAAAAGGAGCGTTTGCTTTTGTTGTAATAAGGCCAATATTATTTAGTTGTTGGTTATTTATTTTGAATATGATTTTAt                                                                                              <  2:126321/141‑1 (MQ=255)                   ttatttatCATTATTATATTTGCTGTTTGGGATTTGTTTATTAGAGTTATAATAGGGGTGTTTGCTTTTGTTGTAAGATGGCCATTGTTATCTAGGTGTTGGTTATTTATTTTGAATATGATTTGATCCACATTATtatac                                                                                <  4:53503/141‑2 (MQ=255)                                      ttGCAGTTTGGGATTTGTTTATTAGAGTTAGAAAAGGAGCGTTTGCTTTTGTTGTAATAAGGCCAATATTATTTAGTTGTTGGTTATTTATTTTGAATATGATTTTATCAAGATTATTATAATTGTATTACATATAGgtgt                                                             <  2:547713/141‑1 (MQ=255)                                             ttGGGATTTGTTTATTAGAGTTAGAAAAGGAGCGTTTGCTTTTGTTGTAATAAGGCCAATATTATTTAGTTGTTGGTTATTTATTTTGAATATGATTTTATCAAGATTATTATAATTGTATTACATATAGGTGTGGGTaaa                                                      <  2:344516/141‑1 (MQ=255)                                                ggATTTGTTTATTAGAGTTAGAAAAGGAGCGTTTGCTTTTGTTGTAATAAGGCCAATATTATTTAGTTGTTGGTTATTTATTTTGAATATGATTTTATCAAGATTATTATAATTGTATTACATATAGGTGTGGGTAAAttt                                                   <  1:252689/141‑1 (MQ=255)                                                           ttaGAGTTAGAAAAGGAGCGTTTGCTTTTGTTGTAATAAGGCCAATATTATTTAGTTGTTGGTTATTTATTTTGAATATGATTTTATCAAGATTATTATAATTGTATTACATATAGGTGTGGGTAAATTTTTATTTATGaa                                        <  3:177444/141‑1 (MQ=255)                                                                                                 aGGCCAATATTATTTAGTTGTTGGTTATTTATTTTGAATATGATTTTATCAAGATTATTATAATTGTATTACATATAGGTGTGGGTAAATTTTTATTTATGAAATGATAAAAAAGTATATACTATTAATATCTTTTTTACt  <  4:244488/141‑1 (MQ=255)                                                                                                                                             |                                                                                                 TCATTTTTCATACTCAGCTTATTTATCATTATTATATTTGCAGTTTGGGATTTGTTTATTAGAGTTAGAAAAGGAGCGTTTGCTTTTGTTGTAATAAGGCCAATATTATTTAGTTGTTGGTTATTTATTTTGAATATGATTTTATCAAGATTATTATAATTGTATTACATATAGGTGTGGGTAAATTTTTATTTATGAAATGATAAAAAAGTATATACTATTAATATCTTTTTTACT  >  USA300TCH1516_ALE/345892‑346128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑