Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1562007	1562247	241	9 [7]	[6] 8	[hlgC_1]	[hlgC_1]

TGTGACCCCCCACTTATCGCTACTTGTATCTTCTGTTCTTTTGACTACCTCAGCGCCATCACCAATATTCTCAATATTGTTATCAGCTTTAGATTCATGAAACGAAGTAGCAATAGGAGTGATTATTCCTAACGACAATGTTGCAGCTAATAGTCTTTTTTTGACCATAAAAATCATTTCCTT  >  USA300TCH1516_ALE/1561867‑1562049                                                                                                                                            |                                            tgtgACCCCCCACTTATCGCTACTTGTATCTTCTGTTCTTTTGACTACCTCAGCGCCATCACCAATATTCTCAATATTGTTATCAGCTTTAGATTCATGAAACGAAGTAGCAATAGGAGTGATTATTCCTAACGACAATGt                                            <  2:120813/141‑1 (MQ=255)                                    ttCTTTTGACTACCTCAGCGCCATCACCAATATTCTCAATATTGTTATCAGCTTTAGATTCATGAAACGAAGTAGCAATAGGAGTGATTATTCCTAACGACAATGTTGCAGCTAATAGTCTTTTTTTGACCATAAAAATCa         <  2:144321/141‑1 (MQ=255)                                       ttttGACTACCTCAGCGCCATCACCAATATTCTCAATATTGTTATCAGCTTTAGATTCATGAAACGAAGTAGCAATAGGAGTGATTATTCCTAACGACAATGTTGCAGCTAATAGTCTTTTTTTGACCATAAAAATCAttt      <  2:525772/141‑1 (MQ=255)                                                ccTCAGCGCCATCACCAATATTCTCAATATTGTTATCAGCTTTAGATTCATGAAACGAAGTAGCAATAGGAGTGATTATTCCTAACGACAATGTTGCAg                                       >  1:238530/1‑99 (MQ=255)                                                ccTCAGCGCCATCACCAATATTCTCAATATTGTTATCAGCTTTAGATTCATGAAACGAAGTAGCAATAGGAGTGATTATTCCTAACGACAATGTTGCAg                                       <  2:238530/99‑1 (MQ=255)                                                                                           aGATTCATGAAACGAAGTAGCAATAGGAGTGATTATTCCTAACGACAATg                                             <  1:242460/50‑1 (MQ=255)                                                                                           aGATTCATGAAACGAAGTAGCAATAGGAGTGATTATTCCTAACGACAATg                                             >  2:242460/1‑50 (MQ=255)                                                                                                                           ttattCCTAACGACAATGTTGCAGCTAATAGTCTTTTTTTGACCATAAAAATCATTTCctt  >  1:396655/1‑61 (MQ=255)                                                                                                                           ttattCCTAACGACAATGTTGCAGCTAATAGTCTTTTTTTGACCATAAAAATCATTTCctt  <  2:396655/61‑1 (MQ=255)                                                                                                                                            |                                            TGTGACCCCCCACTTATCGCTACTTGTATCTTCTGTTCTTTTGACTACCTCAGCGCCATCACCAATATTCTCAATATTGTTATCAGCTTTAGATTCATGAAACGAAGTAGCAATAGGAGTGATTATTCCTAACGACAATGTTGCAGCTAATAGTCTTTTTTTGACCATAAAAATCATTTCCTT  >  USA300TCH1516_ALE/1561867‑1562049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑