Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1562007	1562247	241	9 [7]	[6] 8	[hlgC_1]	[hlgC_1]

ATATTTATTAAAAGATTTACCGAGTTTAAAATATCTACAAATGTGTTTTTTTACTATTATTTCGAAAAAAACCCGTTCATTACCAAACAAATTATAAATAATTTATATTTTGATTGATAATAAACATAAAACCACGATATAGTTGACCATAACAACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTAC  >  USA300TCH1516_ALE/1562108‑1562388                                                                                                                                             |                                                                                                                                             atatTTATTAAAAGATTTACCGAGTTTAAAATATCTACAAATGTGTTTTTTTACTATTATTTCGAAAAAAACCCGTTCATTACCAAACAAATTATAAATAATTTATATTTTGATTGATAATAAACATAAAACCACGAtata                                                                                                                                              <  1:123518/141‑1 (MQ=255)                                                                          cGTTCATTACCAAACAAATTATAAATAATTTATATTTTGATTGATAATAAACATAAAACCACGATATAGTTGACCATAACAACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACgtttgt                                                                     >  2:3737/1‑141 (MQ=255)                                                                                                           atTTTGATTGATAATAAACATAAAACCACGATATAGTTGACCATAACAACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAAtt                                    <  1:3737/141‑1 (MQ=255)                                                                                                                              aTAAAACCACGATATAGTTGACCATAACAACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTaa                 >  3:153680/1‑141 (MQ=255)                                                                                                                                   aCCACGATATAGTTGACCATAACAACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAaataat            >  2:272883/1‑141 (MQ=255)                                                                                                                                       cGATATAGTTGACCATAACAACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGc        >  2:41454/1‑141 (MQ=255)                                                                                                                                             aGTTGACCATAACAACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTat  >  2:13746/1‑140 (MQ=255)                                                                                                                                             aGTTGACCATAACAACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTaa  >  2:13731/1‑140 (MQ=255)                                                                                                                                             |                                                                                                                                             ATATTTATTAAAAGATTTACCGAGTTTAAAATATCTACAAATGTGTTTTTTTACTATTATTTCGAAAAAAACCCGTTCATTACCAAACAAATTATAAATAATTTATATTTTGATTGATAATAAACATAAAACCACGATATAGTTGACCATAACAACTTTTTAATCATAGCACACAATACGAACACAAAATAATTTATATACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTAC  >  USA300TCH1516_ALE/1562108‑1562388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑