Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2089630	2089722	93	9 [7]	[7] 8	sak/lytN_3	Staphylokinase/putative cell wall hydrolase LytN

TGAAGAAAATGAGAATAATAACAATAAAACAGTTAAAAATAATAAACCTCTTTTGAGCATGGCGCTTCCTCCAAATATAATATATTTGTTTTTATTTATCTCTTTTTATAGCTAACACCCTTATTTAAGATGATAAATATCAACAACTTCATTTTATATTGAGAAAATATTAAAAATC  >  USA300TCH1516_ALE/2089495‑2089672                                                                                                                                       |                                            tGAAGAAAATGAGAATAATAACAATAAAACAGTTAAAAATAATAAACCTCTTTTGAGCATGGCGCTTCCTCCAAATATAATATATTTGTTTTTATTTATCTCTTTTTATAGCTAACACCCTTATTTAAGATGATAAATATc                                       <  3:276644/141‑1 (MQ=255)        aaTGAGAATAATAACAATAAAACAGTTAAAAATAATAAACCTCTTTTGAGCATGGCGCTTCCTCCAAATATAATATATTTGTTTTTATTTATCTCTTTTTATAGCTAACACCCTTATTTAAGATGATAAATATCAACAACt                                <  4:129813/141‑1 (MQ=255)                            aaCAGTTAAAAATAATAAACCTCTTTTGAGCATGGCGCTTCCTCCAAATATAATATATTTGTTTTTATTTATCTCTTTTTATAGCTAACACCCTTATTTAAGATGATAAATATCAACAACTTCATTTTATATTGAGAAAat            <  1:362917/141‑1 (MQ=255)                              cAGTTAAAAATAATAAA‑CACTTTTGAGCATGGCGCTTCCTCCAAATATAATATATTTGTTTTTATTTATCTCTTTTTATAGCTAACACCCTTATTTAAGATGATAAATATCAACAACTTCATTTTATATTGaaaaaaaaaa         <  2:412042/141‑5 (MQ=255)                              cAGTTAAAAATAATAAA‑CACTTTTGAGCATGGCGCTTCCTCCAAATATAATATATTTGTTTTTATTTATCTCTTTTTATAGCTAACACCCTTATTTAAGATGATAAATATCAACAACTTCATTTTATATTGAGAAAATAtt         <  4:191909/141‑1 (MQ=255)                                gTTAAAAATAATAAACCTCTTTTGAGCATGGCGCTTCCTCCAAATATAATATATTTGTTTTTATTTATCTCTTTTTATAGCTAACACCCTTATTTAAGATGATa                                             <  1:54510/104‑1 (MQ=255)                                gTTAAAAATAATAAACCTCTTTTGAGCATGGCGCTTCCTCCAAATATAATATATTTGTTTTTATTTATCTCTTTTTATAGCTAACACCCTTATTTAAGATGATa                                             >  2:54510/1‑104 (MQ=255)                                      aataatAAACCTCTTTTGAGCATGGCGCTTCCTCCAAATATAATATATTTGTTTTTATTTATCTCTTTTTATAGCTAACACCCTTATTTAAGATGATAAATATCAACAACTTCATTTTATATTGAGAAAATATTAAAAATc  <  2:573225/141‑1 (MQ=255)                                      aataatAAACCTCTTTTGAGCATGGCGCTTCCTCCAAATATAATATATTTGTTTTTATTTATCTCTTTTTATAGCTAACACCCTTATTTAAGATGATAAATATCAACAACTTCATTTTATATTGAGAAAATATTAAAAATc  <  2:573233/141‑1 (MQ=255)                                                                                                                                       |                                            TGAAGAAAATGAGAATAATAACAATAAAACAGTTAAAAATAATAAACCTCTTTTGAGCATGGCGCTTCCTCCAAATATAATATATTTGTTTTTATTTATCTCTTTTTATAGCTAACACCCTTATTTAAGATGATAAATATCAACAACTTCATTTTATATTGAGAAAATATTAAAAATC  >  USA300TCH1516_ALE/2089495‑2089672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑