Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2348638	2348840	203	8 [6]	[6] 8	[USA300HOU_RS11980]–[clpB_3]	[USA300HOU_RS11980],[clpB_3]

TCGTATTTAATATAGATATTCTTCCTCTATCAAGTAATTTCATTGTATATTCATCTACATAGTTGAAGGAATATAAATATAAAGGTAGCTTAGATTTTAAGAAAAATTCTTCTTCCTTCATTTTATAAAAGTCTTCCATTGTTATTATTTTAGTACCTATTAACTCTACATTTAAAAAATT  >  USA300TCH1516_ALE/2348497‑2348677                                                                                                                                             |                                         tCGTATTTAATATAGATATTCTTCCTCTATCAAGTAATTTCATTGTATATTCATCTACATAGTTGAAGGAATATAAATATAAAGGTAGCTTAGATTTTAAGAAAAATTCTTCTTCCTTCATTTTATAAAAGTCTTCCATTg                                          <  4:106572/141‑1 (MQ=255) tCGTATTTAATATAGATATTCTTCCTCTATCAAGTAATTTCATTGTATATTCATCTACATAGTTGAAGGAATATAAATATAAAGGTAGCTTAGATTTTAAGAAAAATTCTTCTTCCTTCATTTTATAAAAGTCTTCCATTg                                          <  4:106587/141‑1 (MQ=255)              aGATATTCTTCCTCTATCAAGTAATTTCATTGTATATTCATCTACATAGTTGAAGGAATATAAATATAAAGGTAGCTTAGATTTTAAGAAAAATTCTTCTTCCTTCATTTTATAAAAGTCTTCCATTGTTATTATTTTAGt                             <  2:426202/141‑1 (MQ=255)                   ttcttcCTCTATCAAGTAATTTCATTGTATATTCATCTACATAGTTGAAGGAATATAAATATAAAGGTAGCTTAGATTTTAAGAAAAATTCTTCTTCCTTCATTTTATAAAAGTCTTCCATTGTTATTATTTTAGTACCTa                        <  1:467810/141‑1 (MQ=255)                           ctATCAAGTAATTTCATTGTATATTCATCTACATAGTTGAAGGAATATAAATATAAAGGTAGCTTAGATTTTAAGAAAAATTCTTCTTCCTTCATTTTATAAAAGTCTTCCATTGttatta                                    >  1:321969/1‑121 (MQ=255)                           ctATCAAGTAATTTCATTGTATATTCATCTACATAGTTGAAGGAATATAAATATAAAGGTAGCTTAGATTTTAAGAAAAATTCTTCTTCCTTCATTTTATAAAAGTCTTCCATTGttatta                                    <  2:321969/121‑1 (MQ=255)                                 aGTAATTTCATTGTATATTCATCTACATAGTTGAAGGAATATAAATATAAAGGTAGCTTAGATTTTAAGAAAAATTCTTCTTCCTTCATTTTATAAAAGTCTTCCATTGTTATTATTTTAGTACCTATTAACTATAAAttt          <  2:51875/141‑1 (MQ=255)                                         cATTGTATATTCATCTACATAGTTGAAGGAATATAAATATAAAGGTAGCTTAGATTTTAAGAAAAATTCTTCTTCCTTCATTTTATAAAAGTCTTCCATTGTTATTATTTTAGTACCTATTAACTCTACATTTAAAAAAtt  <  3:30657/141‑1 (MQ=255)                                                                                                                                             |                                         TCGTATTTAATATAGATATTCTTCCTCTATCAAGTAATTTCATTGTATATTCATCTACATAGTTGAAGGAATATAAATATAAAGGTAGCTTAGATTTTAAGAAAAATTCTTCTTCCTTCATTTTATAAAAGTCTTCCATTGTTATTATTTTAGTACCTATTAACTCTACATTTAAAAAATT  >  USA300TCH1516_ALE/2348497‑2348677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑