Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2348638	2348840	203	8 [6]	[6] 8	[USA300HOU_RS11980]–[clpB_3]	[USA300HOU_RS11980],[clpB_3]

AAATTTTAAAATTATTAAACTCTTAACTTATACTACTTACAACCTTACATAGATAGTACTTTATTAATAGATAACTTATACTAAAAAAATATAAAGCATATAAATTAATCTATAATATCCGTATTAAATAATTCATCTTCAAAAATTATTGTATAAATATCATTTGTTATTATTTTCTTTAAATACCTAATGTTATCGATATCTATTTCTGTCTCTTTATATTTCTCTAACAAGTTATATGCGGTAACTATTCTTT  >  USA300TCH1516_ALE/2348714‑2348969                                                                                                                                |                                                                                                                                 aaaTTTTAAAATTATTAAACTCTTAACTTATACTACTTACAACCTTACATAGATAGTACTTTATTAATAGATAACTTATACTAAAAAAATATAAAGCATATAAATTAATCTATAATATCCGTATTAAATAATTCATCTTCa                                                                                                                     >  1:573661/1‑141 (MQ=255)                                      tACAACCTTACATAGATAGTACTTTATTAATAGATAACTTATACTAAAAAAATATAAAGCATATAAATTAATCTATAATATCCGTATTAAATAATTCATCTTCAAAAATTATTGTATAAATATCATTTGTTATTATTTTCt                                                                                >  2:501440/1‑141 (MQ=255)                                                           cTTTATTAATAGATAACTTATACTAAAAAAATATAAAGCATATAAATTAATCTATAATATCCGTATTAAATAATTCATCTTCAAAAATTATTGTATAAATATCATTTGTTATTATTTTCTTTAAATACCTAATGTTATCGa                                                           <  2:573661/141‑1 (MQ=255)                                                                                    aaaaaaTATAAAGCATATAAATTAATCTATAATATCCGTATTAAATAATTCATCTTCAAAAATTATTGTATAAATATCATTTGTTATTATTTTCTTTAAATACCTAATGTTATCGATATCTATTTCTGTCTCTTTATAttt                                  <  1:501440/141‑1 (MQ=255)                                                                                                  atatAAATTAATCTATAATATCCGTATTAAATAATTCATCTTCAAAAATTATTGTATAAATATCATTTGTTATTATTTTCTTTAAATACCTAATGTTATCGATATCTATTTCTGTCTCTTTATATTTCTCTAACAAGTtat                    >  2:262015/1‑141 (MQ=255)                                                                                                                    tatCCGTATTAAATAATTCATCTTCAAAAATTATTGTATAAATATCATTTGTTATTATTTTCTTTAAATACCTAATGTTATCGATATCTATTTCTGTCTCTTTATATTTCTCTAACAAGTTATATGCGGTAACTAttcttt  <  1:262015/141‑1 (MQ=255)                                                                                                                                ataatTCATCTTCAAAAATTATTGTATAAATATCATTTGTTATTATTTTCTTTAAATACCTAATGTTATCGATATCTa                                                     <  3:11629/78‑1 (MQ=255)                                                                                                                                ataatTCATCTTCAAAAATTATTGTATAAATATCATTTGTTATTATTTTCTTTAAATACCTAATGTTATCGATATCTa                                                     >  4:11629/1‑78 (MQ=255)                                                                                                                                |                                                                                                                                 AAATTTTAAAATTATTAAACTCTTAACTTATACTACTTACAACCTTACATAGATAGTACTTTATTAATAGATAACTTATACTAAAAAAATATAAAGCATATAAATTAATCTATAATATCCGTATTAAATAATTCATCTTCAAAAATTATTGTATAAATATCATTTGTTATTATTTTCTTTAAATACCTAATGTTATCGATATCTATTTCTGTCTCTTTATATTTCTCTAACAAGTTATATGCGGTAACTATTCTTT  >  USA300TCH1516_ALE/2348714‑2348969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑