BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 800928	92 (0.900)	9 (0.090)	8/246	NT	8.2%	intergenic (+62/‑289)	hisC_1/USA300HOU_RS03915	Histidinol‑phosphate aminotransferase/Putative 5'(3')‑deoxyribonucleotidase
*	?	USA300TCH1516_ALE	801948 =	115 (1.190)	9 (0.090)	8/246	NT	8.2%	intergenic (+189/+435)	USA300HOU_RS03915/USA300HOU_RS03920	Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase

Only 100 of 116 total aligned reads displayed.

GGTGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCAT  >  USA300TCH1516_ALE/800789‑801066

ggTGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACt                                                                                                                                           <  2:448217/141‑1 (MQ=255)

ggTGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACa                                                                                                                                           >  1:365103‑M1/1‑140 (MQ=255)

ggTGTTAGAAGTACAATTTGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATTATTCTTTCGAAAAATTTATTTCGTCGTCCCACCCCAACt                                                                                                                                           <  2:1049835/141‑1 (MQ=38)

 gtgtGAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACtt                                                                                                                                          <  2:447955/141‑1 (MQ=255)

  tgtTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAATATCTTTTTCGTCGTCCCACCCCAACTTg                                                                                                                                         <  2:849550/141‑1 (MQ=255)

  tgtTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAGATTTATTTCGTCGTCCCAAGCCAACTTg                                                                                                                                         >  1:268905/1‑141 (MQ=255)

   gaaaGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGGAAAATTTATTTCGTCGTCCCACCCCAACTTGc                                                                                                                                        >  2:792858/4‑141 (MQ=255)

       gAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTg                                                                                                                                    >  1:547490/1‑141 (MQ=255)

       aaatTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACataaagaa                                                                                                                                    <  1:150550‑M1/140‑9 (MQ=255)

          ttACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACataaagaaata                                                                                                                                 <  2:365103‑M1/141‑12 (MQ=255)

           tACCATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTg                                                                                                                                <  1:6462/141‑1 (MQ=255)

           tACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTg                                                                                                                                <  2:938550/141‑1 (MQ=255)

           tACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTg                                                                                                                                <  1:852001/141‑1 (MQ=255)

            aCAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGt                                                                                                                               >  1:290992/1‑141 (MQ=255)

             cAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTTAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTa                                                                                                                              >  2:365787/1‑141 (MQ=255)

             cAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTa                                                                                                                              >  1:6797/1‑141 (MQ=255)

              aaTTTGGTTGAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGTGACAGAAAGGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAg                                                                                                                             <  1:319009/141‑1 (MQ=25)

              aaTTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGCGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGtcg                                                                                                                             >  2:1031887/1‑139 (MQ=255)

               aTTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACataaagaaatactttt                                                                                                                            >  2:912824‑M1/1‑125 (MQ=255)

                ttGGTTTTAAAGATCAAACTGATAAAAGGTTAGAAGTGTTATCAAATTTGAAATACGAATAGTAAGTGGGGAGTGGCACAGAAATGCTACTTTCGCATAATTTATTTCGTCGTCCCACCCCAACTGGCATTGTCTGTAGaa                                                                                                                           <  2:1153708/141‑1 (MQ=21)

                ttGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGaa                                                                                                                           >  2:616023/1‑141 (MQ=255)

                       tcaaGAACAAACTGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTggat                                                                                                                    <  1:384685/139‑3 (MQ=255)

                       tAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGa                                                                                                                    >  2:188691/1‑141 (MQ=255)

                       tAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGa                                                                                                                    <  2:320613/141‑1 (MQ=255)

                           gAACCAAAGGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATcc                                                                                                                <  1:510076/141‑1 (MQ=255)

                           gAACAAAATGATAATATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATcc                                                                                                                <  1:25377/141‑1 (MQ=255)

                           gAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATcc                                                                                                                >  2:914822/1‑141 (MQ=255)

                           gAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATcc                                                                                                                <  1:710488/141‑1 (MQ=255)

                           gAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGAAAGAAATGATCCGTTCGCAAAATTACTTTCGTCGTCCCACCCCAACTGGCATTGTCTGTAGAAATTGGGAAtgc                                                                                                                >  1:211698/1‑139 (MQ=25)

                           aaaCAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATcc                                                                                                                <  1:660302/140‑1 (MQ=255)

                            aaCAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTACATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATCCGTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTggattccca                                                                                                               <  2:152543/141‑8 (MQ=25)

                            aaCAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGCAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCa                                                                                                               >  1:718737/1‑141 (MQ=255)

                             aCAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCaa                                                                                                              >  1:1086188/1‑141 (MQ=255)

                             aCAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCaa                                                                                                              >  2:591742/1‑141 (MQ=255)

                                    gATAAAAAGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTAAATCGTCCCACACCAACTTGCAACATTCGTATAAATTGAGAATCCAATTTctct                                                                                                       >  1:749792/1‑141 (MQ=21)

                                     aTAAAATGTTAGAAGTTTTATCAAACTTTAAATACGACTCGTAAGTGGGGAGTGGGACAGACATGATACTTTCGCAAAATTTATTTCGTCCTCCCGGCCAAACTTGCATTGTCTGTAGAAAGTGGGAATCCAGTTTCTCtt                                                                                                      >  1:710549/1‑141 (MQ=21)

                                     aTAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCGCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCtt                                                                                                      >  1:373047/1‑141 (MQ=255)

                                          aTGTTAGAAGTTGTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTTGGAATCCAATTTCTCTttgttg                                                                                                 >  1:174179/1‑141 (MQ=255)

                                                 gaGTTTTATGAAANTTTAAGTAGGAATAGTNANTGGGGAGGGGGACAGAAACGATAAGCAGTCAAAATTTATCTCGTCGTCCCGCCCCAACTTGCAGTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGcccc                                                                                          <  1:566887/140‑1 (MQ=17)

                                                 aaGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGcccc                                                                                          <  1:791311/141‑1 (MQ=255)

                                                 aaGTTTTATCAAACCTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGcccc                                                                                          <  1:1194732/141‑1 (MQ=255)

                                                  aGTGTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCccg                                                                                         <  1:907369/141‑1 (MQ=255)

                                                      ttATCAAACTTTAACTACGACTAGTAGGTGGGGAGTGCGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGATTCCAATTTCTCTTTGTTGGGGCCCCGCCgg                                                                                     <  1:1036809/141‑1 (MQ=17)

                                                      ttATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactc                                                                                     <  2:1179479‑M1/141‑56 (MQ=255)

                                                       tATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGTCCCGCCGGc                                                                                    <  1:550319/141‑1 (MQ=255)

                                                       tATCAAACTTCAAATACGAATAGTAAGTGGGGAGCGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGc                                                                                    <  1:103495/141‑1 (MQ=255)

                                                         tCAAACTTTAAAGACGAATAGTAAGGGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCaa                                                                                  <  1:309795/141‑1 (MQ=255)

                                                          cAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAg                                                                                 >  1:196351/1‑141 (MQ=255)

                                                            aaCTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGt                                                                               <  2:918762/141‑1 (MQ=255)

                                                             aCTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGtt                                                                              <  2:321540/141‑1 (MQ=255)

                                                              cTTTAAATACGAATAGTAAGTGGGGAGTTGGACAGAAATGATACTTTCGCAAAAGTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTg                                                                             >  1:773949/1‑141 (MQ=255)

                                                                ttAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCATTTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGAc                                                                           >  1:310948/1‑141 (MQ=255)

                                                                 tAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACt                                                                          <  1:972815/141‑1 (MQ=255)

                                                                      aCGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGCCAAGGTTGACTAGAAt                                                                     <  1:591742/141‑1 (MQ=255)

                                                                            aGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGaaaa                                                               >  2:918843/1‑141 (MQ=255)

                                                                            aGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGaaaa                                                               >  2:1033976/1‑141 (MQ=255)

                                                                             gTAAGTGGGGAGTGGGTCAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGaaaaa                                                              >  1:709895/1‑141 (MQ=255)

                                                                               aaGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAg                                                            >  2:2182/1‑141 (MQ=255)

                                                                                aGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGc                                                           <  1:1035830/141‑1 (MQ=255)

                                                                                   ggggAGTGGGACAGAAATGATACTTACAAAAAAATAATTTCGTTGTCCCACCCCAACTCGGAATGTCTGTAGAAATTGCGAAACCAATTTCTCTTTTTTGGGGCCCCGCCGGCAAGGTTGAAAAAAAAAAAAAAAAGCTTg                                                        <  2:798949/141‑1 (MQ=2)

                                                                                    gggAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaagtacacattagc                                                       >  1:899147‑M1/1‑56 (MQ=255)

                                                                                     ggAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGtt                                                      <  2:442372/141‑1 (MQ=38)

                                                                                     ggAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGtt                                                      >  1:407331/1‑141 (MQ=39)

                                                                                      gAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaagtacacattagctg                                                     >  2:1091223‑M1/1‑54 (MQ=255)

                                                                                        gTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTGGAATTGAAAAAAGCTTGTTACa                                                   >  2:23819/1‑141 (MQ=38)

                                                                                                 aaaTGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAttt                                          <  1:616023/141‑1 (MQ=40)

                                                                                                      aTACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGtt                                     >  1:433620/1‑141 (MQ=40)

                                                                                                         cTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAg                                  <  1:1159950/141‑1 (MQ=38)

                                                                                                           ttCGCAAACTTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc                                <  1:448015/141‑1 (MQ=25)

                                                                                                           ttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAGTTTCGTTCAggc                                >  1:357753/1‑139 (MQ=25)

                                                                                                            tcacAAAATTTATTTCGTCGTCCCACACCAACTTGCATTGTCTGTAGAAATTGGTAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa                               <  2:130274/138‑1 (MQ=16)

                                                                                                            tCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAGGCGCATTTTCGTTCAGTCa                               >  2:748541/1‑141 (MQ=25)

                                                                                                             cGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCaa                              <  2:268905/141‑1 (MQ=34)

                                                                                                             cGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCaa                              <  1:188691/141‑1 (MQ=35)

                                                                                                              ccAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCACTTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGAGTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAac                             <  1:543860/140‑1 (MQ=17)

                                                                                                               tcaagtttatttCGTCGCCCCACCCCAACTGGCATTGTCTGTAGGAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGAAAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAact                            <  2:394276/136‑1 (MQ=11)

                                                                                                               cAAAATTTATTTCGTCGTCCCACCGCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTTTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAact                            <  2:48087/141‑1 (MQ=18)

                                                                                                               cAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAact                            <  2:387873/141‑1 (MQ=33)

                                                                                                                       atttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCAACTTCCGCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa                    >  1:169788/1‑141 (MQ=255)

                                                                                                                        tttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGACTCCAATTTCTCTTTGTTGGGGACCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACCAGCGCATTTTCGTTCTGTCAACTACTGCCCat                   >  2:119710/1‑141 (MQ=11)

                                                                                                                        tttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat                   >  2:1179650/1‑141 (MQ=34)

                                                                                                                         ttCGTCGTCCCACCCCAACTGGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAata                  <  1:134864/141‑1 (MQ=25)

                                                                                                                          tcgtcgTCTCACCCCAACataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaagtacacattagctgtgactaatgataaagaatcgctacataatcaatcat                 <  2:151497‑M1/141‑124 (MQ=255)

                                                                                                                              cgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCATTCAGTCAACTACTGCCAATATAACt             <  2:718737/141‑1 (MQ=25)

                                                                                                                                 cccACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATCACTTTg          >  1:669498/1‑141 (MQ=25)

                                                                                                                                 cccACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTg          >  2:1108263/1‑141 (MQ=35)

                                                                                                                                    cccccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTag       <  1:1108622/140‑1 (MQ=25)

                                                                                                                                    aCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAGGCGCATTTTCGTTCAGTCAACTACTGCCAATCCAACTGAGTag       >  1:325008/1‑141 (MQ=11)

                                                                                                                                    aCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTag       <  1:2182/141‑1 (MQ=35)

                                                                                                                                    aCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTag       <  1:229759/141‑1 (MQ=35)

                                                                                                                                    aCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTag       <  1:1131617/141‑1 (MQ=35)

                                                                                                                                     ccccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTaga      <  1:1005453/141‑1 (MQ=35)

                                                                                                                                      cccAACataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaagtacacattagctgtgactaatgataaagaatcgctacataatcaatcattagtcgttcttt     >  2:80917‑M1/1‑6 (MQ=255)

                                                                                                                                       ccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGc    <  2:1039593/141‑1 (MQ=35)

                                                                                                                                        cAACataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaagtacacattagctgtgactaatgataaagaatcgctacataatcaatcattagtcgttctttat   <  1:6303‑M1/141‑138 (MQ=255)

                                                                                                                                        cAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCa   <  1:951119/141‑1 (MQ=35)

                                                                                                                                         aaCataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaagtacacattagctgtgactaatgataaagaatcggtccataatcaataattcatcgttttttatt  >  2:1069711‑M1/1‑3 (MQ=255)

                                                                                                                                         aaCataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaagtacacattagctgtgactaatgataaagaatcgctacataatcaatcattattcgttctttatc  <  2:700475‑M1/141‑139 (MQ=255)

                                                                                                                                         aaCataaagaaatactttttctttagaaattagtatttcttatgcatgagtgtaactcatgcattcatatttttaagtacacattagctgtgactaatgataaagaatcgctacataatcaatcattagtcgttctttatc  >  2:1108579‑M1/1‑3 (MQ=255)

                                                                                                                                         aaCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCAt  >  1:984821/1‑141 (MQ=35)

GGTGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCAT  >  USA300TCH1516_ALE/800789‑801066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.