BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 800928	92 (0.900)	9 (0.090)	8/246	NT	8.2%	intergenic (+62/‑289)	hisC_1/USA300HOU_RS03915	Histidinol‑phosphate aminotransferase/Putative 5'(3')‑deoxyribonucleotidase
*	?	USA300TCH1516_ALE	801948 =	115 (1.190)	9 (0.090)	8/246	NT	8.2%	intergenic (+189/+435)	USA300HOU_RS03915/USA300HOU_RS03920	Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase

Only 100 of 139 total aligned reads displayed.

TAAAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATT  >  USA300TCH1516_ALE/801808‑802088

ggtgttagaattacaattggttttaaagaacaaaatgataaaatgttagaagttttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaaca                                                                                                                                              >  1:365103‑M2/141‑141 (MQ=255)

 aaaGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTTGGGTGGGCCCCAACAt                                                                                                                                             <  1:594193/141‑1 (MQ=255)

  aaGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCTCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATa                                                                                                                                            >  2:1139185/1‑141 (MQ=255)

    gTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGACAATGTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATaaa                                                                                                                                          >  1:29166/1‑141 (MQ=255)

       aaattacaattggttttaaagaacaaaatgataaaatgttagaagttttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGaa                                                                                                                                       <  1:150550‑M2/8‑1 (MQ=255)

        ttGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGaaa                                                                                                                                      <  1:1036309/141‑1 (MQ=255)

        ttGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGaaa                                                                                                                                      <  1:503011/141‑1 (MQ=255)

          ttacaattggttttaaagaacaaaatgataaaatgttagaagttttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATa                                                                                                                                    <  2:365103‑M2/11‑1 (MQ=255)

          gtgACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAGATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATa                                                                                                                                    >  2:96081/1‑141 (MQ=255)

           tgACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGATAAATTTGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATAc                                                                                                                                   <  1:546391/141‑1 (MQ=255)

            gACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACt                                                                                                                                  >  1:301034/1‑141 (MQ=255)

             aCTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCACCCACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACtt                                                                                                                                 >  2:129687/1‑141 (MQ=255)

               tGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACtttt                                                                                                                               <  1:422890/141‑1 (MQ=255)

               attggttttaaagaacaaaatgataaaatgttagaagttttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACtttt                                                                                                                               >  2:912824‑M2/126‑141 (MQ=255)

                gagaTGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACttttt                                                                                                                              <  1:55508/141‑1 (MQ=255)

                  gaTGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCt                                                                                                                            <  1:903681/141‑1 (MQ=255)

                   aTGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCtt                                                                                                                           >  2:55105/1‑141 (MQ=255)

                   aTGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCtt                                                                                                                           <  1:799967/141‑1 (MQ=255)

                   aTGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGCGCCCCAACATAAAGAAATACTTTTTCtt                                                                                                                           <  2:430627/141‑1 (MQ=255)

                     gAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAAAATAAAGAAATACTTTTTCTTTa                                                                                                                         >  2:606138/1‑141 (MQ=255)

                          tttATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAACTAATTTTTCTTTAGAAAt                                                                                                                    >  1:267880/1‑141 (MQ=255)

                           ttATGTCTTAGACATTAAAACCCTATTTTGGCAGTAGTTGACTGCGGGGTCCCAACATAGAGAATTTAGAACGCCAATTTCTATAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAAtt                                                                                                                   <  1:292800/141‑1 (MQ=21)

                             aTGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAg                                                                                                                 <  1:67475/141‑1 (MQ=255)

                              tGTCTTAGACACTCCAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGt                                                                                                                <  2:860077/141‑1 (MQ=255)

                                tCTTAGACACTACAACACTATATTGGCGGTAGTTGACTGCGGGGCCCAAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAatat                                                                                                              >  2:4569/1‑141 (MQ=255)

                                  ttAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTAttt                                                                                                            <  1:15498/141‑1 (MQ=255)

                                    aGACACTACAACACTATATTGGCAGTAGTTGACTGCTGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAACTAGTATTTCt                                                                                                          <  1:865807/141‑1 (MQ=255)

                                        acTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCAAACATAAAGGCATACTTTTTCTTTAGAAAGTAGTATTTcctctc                                                                                                      >  2:398172/1‑136 (MQ=18)

                                         cTACAACACTATATTGGCAGTAGTTGACTGGGGCGCCTCAAAATCGAGAAATTGGAACGCCAATGGCTACATACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGc                                                                                                     >  2:827560/1‑141 (MQ=18)

                                          tACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCa                                                                                                    <  1:401679/141‑1 (MQ=255)

                                           acaacaCTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGCACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCATTAGAAATTAGTATTTCTTATGCAt                                                                                                   >  2:6303/1‑141 (MQ=255)

                                           acaacaCTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATAATTTTTCTTTAGAAATTAGTATTTCTTATGCAt                                                                                                   >  2:954764/1‑141 (MQ=255)

                                             aacaCTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGa                                                                                                 >  2:299550/1‑141 (MQ=255)

                                               cacTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgt                                                                                               <  2:756794/141‑1 (MQ=255)

                                               cacTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGCACCAACAGGAGATAAAGAAATACTTTTTCTTTAGAAATTCGTATTTCTTATGCATGAgt                                                                                               >  1:34499/1‑141 (MQ=17)

                                                acTATATGTGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgtg                                                                                              <  2:378492/141‑1 (MQ=255)

                                                 cTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGACACGCCAATTTCTACAGACAGTGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTGTTTCTTATGCATGAgagt                                                                                             >  1:908250/1‑141 (MQ=17)

                                                 cTAGATTGGCAGTAGTTGCCTGCGGGGCCCCAACATAGAGAACTTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAACACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgtgt                                                                                             <  2:778595/141‑1 (MQ=255)

                                                 atataTTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgtgt                                                                                             <  2:116540/140‑1 (MQ=255)

                                                     atTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGGGGGCACCAACATAAAAAAATACTTTTTCTTTAGAAATACGTATTTCTTATGCATGAGTGTAAcc                                                                                         >  2:322616/1‑140 (MQ=18)

                                                      ttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTc                                                                                        <  2:1179479‑M2/55‑1 (MQ=255)

                                                      ttGGCAGTAGGTGACTGCGGGGCCCCAACATAGAGAAAATGGAGCGCCAATTTCTACAGACAATGCAAGTTGGTGGGGGCCCCAACATTATGATATACTTTTTCGTTAGAAATTATTATTTCTTATGCATGAgttacactc                                                                                        <  2:348469/141‑8 (MQ=17)

                                                           agtagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCa                                                                                   >  1:334740/1‑141 (MQ=255)

                                                           agtagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGGTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTAGTTCTTATGCATGAGTGTAACTCATGCa                                                                                   <  2:149249/141‑1 (MQ=255)

                                                            gtagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCAt                                                                                  >  1:237495/1‑141 (MQ=255)

                                                            gtagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAATATTTCTTATGCATGAGGGTAACACATTCAt                                                                                  >  1:913867/1‑141 (MQ=255)

                                                             tagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGAAACTGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTATTATTTCTTATGCATGAGTGTAACTCATGCAtt                                                                                 >  2:1183728/1‑141 (MQ=255)

                                                               tttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCa                                                                               <  1:354166‑M2/64‑1 (MQ=255)

                                                                  gACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCatat                                                                            <  1:645115/141‑1 (MQ=255)

                                                                   aCTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGATGGTAACTAATGAAtttaaaat                                                                           >  1:1169958/1‑135 (MQ=17)

                                                                     tGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATAtttt                                                                         <  2:829869/141‑1 (MQ=255)

                                                                      gCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATAttttt                                                                        >  1:1160731/1‑141 (MQ=255)

                                                                      gCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATAttttt                                                                        >  1:352747/1‑141 (MQ=255)

                                                                       cGGGGCCCGAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGACCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATTCATTCATATTTTTa                                                                       <  1:622854/141‑1 (MQ=255)

                                                                       cGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTa                                                                       <  1:628319/141‑1 (MQ=255)

                                                                        ggggCCCCAACATAGCGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTaa                                                                      >  2:343338/1‑141 (MQ=255)

                                                                          ggCCCCAACATAGAGAAATTGGAACGCCAATTTATACAGACAATGCAAGTTGGGGTGGGCCACAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGt                                                                    <  1:1404/141‑1 (MQ=255)

                                                                           gCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTa                                                                   >  2:1078395/1‑141 (MQ=255)

                                                                              ccAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTacac                                                                <  1:743984/141‑1 (MQ=255)

                                                                              ccAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTacac                                                                >  2:171551/1‑141 (MQ=255)

                                                                                      gagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCtg                                                        >  2:1091223‑M2/55‑141 (MQ=255)

                                                                                      gagaAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATTAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGGAACTCATGCATTCATATTTTTAAGTACACATTAGCtg                                                        <  2:695166/141‑1 (MQ=255)

                                                                                      aagaAACTGGAACGACAATTACCACAGAGAATGCAAGGTAGGGTGGTCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCtg                                                        <  2:41152/140‑1 (MQ=18)

                                                                                       agaAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAATATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCtgt                                                       <  2:781722/141‑1 (MQ=255)

                                                                                         aaaTTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAACTTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGa                                                     >  1:110101/1‑141 (MQ=255)

                                                                                           atgtgcaCGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACt                                                   <  2:937935/135‑1 (MQ=255)

                                                                                           aTTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACAAAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCGTGCATTCATATTTTTAAGTACACATTAGCTGTGACt                                                   <  2:24178/141‑1 (MQ=255)

                                                                                           aTTGGAACCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACt                                                   <  1:460057/141‑1 (MQ=255)

                                                                                            ttGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTGTTTGTTATTCATGAGTGTAACTCATGCATTCATGTTTTTGAGTACCCATTACATGTGACTa                                                  >  1:394435/1‑141 (MQ=17)

                                                                                              ggAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCCTGCATTCATATTTTTAAGTACACATTAGCTGTGATTAAt                                                >  2:534145/1‑141 (MQ=255)

                                                                                                aaCGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTCATGa                                              >  2:1040218/1‑141 (MQ=255)

                                                                                                aaCGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGa                                              >  2:969086/1‑141 (MQ=255)

                                                                                                   gCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATaa                                           <  1:1106510/141‑1 (MQ=255)

                                                                                                    ccAATTTCTACAGACAATTCAAGTTGGGGTGGGCCCCAACATAAAGAAATACGTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATaaa                                          <  2:287005/141‑1 (MQ=255)

                                                                                                    ccAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGTAATACTTTTTCATTAGAAAATAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATaaa                                          <  1:46437/141‑1 (MQ=255)

                                                                                                       aTTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGaa                                       >  1:765949/1‑141 (MQ=255)

                                                                                                        tttCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAaataat                                      >  2:802154/1‑141 (MQ=255)

                                                                                                         ttCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATc                                     >  2:76423/1‑141 (MQ=255)

                                                                                                          tCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATcc                                    >  2:621127/1‑140 (MQ=255)

                                                                                                          tCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCg                                    <  1:1053126/141‑1 (MQ=255)

                                                                                                            tACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCt                                  >  1:891761/1‑141 (MQ=255)

                                                                                                             aCAGACAATGCGAGTTGGGGTGGACCACAACATAAAGCAATACTTTTACTTTAGAAAAGAGTAACTCATATGCATGAGTGGAAATCTTGCCGTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAACGAATAGCTa                                 >  2:529035/1‑141 (MQ=18)

                                                                                                             aCAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTa                                 >  1:983775/1‑141 (MQ=255)

                                                                                                              cAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTAc                                <  2:13341/141‑1 (MQ=255)

                                                                                                                  cAATGCAAGTTGGGGTGTGCCTCAATATAAAGAAATACTTTTTGTGTAGACATTATTAGTTCGTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTAGACATTAGCTGAGACTAATGAAAATGTATCGCTTGATaa                            <  2:19097/141‑1 (MQ=255)

                                                                                                                     tGCAAGTTGGGGTGGGGCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATaatca                         >  1:595500/1‑141 (MQ=255)

                                                                                                                     tGCAAGTTGGGGTGGGCCCCAACATAACGCAATACTTTTTCTTTAGAAATTAGTATTTCTTCTGCATGAGTGTAGCTCATGCATTCATATGTTTGAGTACCCATTCGCTGTAACTACTGATAAGGAACAGCTACATactaa                         >  2:357819/1‑137 (MQ=17)

                                                                                                                     tGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATaatca                         >  2:847109/1‑141 (MQ=255)

                                                                                                                       cAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTTCACATTAGCTGTAACTAATGATAAAGAATCGCTAAATaatcaat                       >  2:22804/1‑141 (MQ=255)

                                                                                                                          tcgtcgtctcaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCAt                    <  2:151497‑M2/123‑1 (MQ=255)

                                                                                                                            tGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTa                  <  1:1068345/141‑1 (MQ=255)

                                                                                                                               ggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTc               <  1:1038716/141‑1 (MQ=255)

                                                                                                                               ggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTc               <  1:471135/141‑1 (MQ=255)

                                                                                                                                gTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCg              <  1:476024/141‑1 (MQ=255)

                                                                                                                                gTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCg              >  1:674079/1‑141 (MQ=255)

                                                                                                                                gTGGGCCCCAACATAAAGAAATACTTTTTCTGTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCg              <  2:91918/141‑1 (MQ=255)

                                                                                                                                        caacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTAt      <  1:6303‑M2/137‑1 (MQ=255)

                                                                                                                                         aacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGGTCCATAATCAATAATTCATCGTTTTTTatt     >  2:1069711‑M2/4‑140 (MQ=255)

                                                                                                                                         aacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTATTCGTTCTTTATc     <  2:700475‑M2/138‑1 (MQ=255)

                                                                                                                                         aacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATc     >  2:1108579‑M2/4‑141 (MQ=255)

TAAAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATT  >  USA300TCH1516_ALE/801808‑802088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.