New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2257232 =	80 (0.780)	4 (0.040)	3/248	NT	5.2%	coding (293/414 nt)	USA300HOU_RS11555	hypothetical protein
	?	USA300TCH1516_ALE	2257282 =	71 (0.730)					coding (243/414 nt)	USA300HOU_RS11555	hypothetical protein

AATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTT  >  USA300TCH1516_ALE/2257092‑2257370                                                                                                                                             |                                                                                                                                           aaTTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAACAATTCGATAACCGa                                                                                                                                            >  2:771142/1‑141 (MQ=255)  aTTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGaa                                                                                                                                           <  2:424437/141‑1 (MQ=255)  aTTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGaa                                                                                                                                           >  1:456461/1‑141 (MQ=255)  aTTAGCAAGGATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGaa                                                                                                                                           >  1:877642/1‑141 (MQ=255)   ttAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTCTTTCTATTATTAGCAAACATTCGGTGACGGaaa                                                                                                                                          >  1:229879/1‑141 (MQ=255)   ttAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATAATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGACATGTTGTTTTCCACATCATATTTCTATTATTCGCAAACCTTCGATACCAGaac                                                                                                                                          >  2:588559/1‑140 (MQ=255)      gaagttggccaacaattttttaaacaacatccagaagcggcaaataaaaatagtgtgattttacagaaaggtgatcgtatatattttgaatcgcaggcgattattaaactaatcacagcactacctaatcgaactAAATTa                                                                                                                                       >  2:473523‑M1/136‑141 (MQ=255)      gCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTa                                                                                                                                       <  1:1049934/141‑1 (MQ=255)      gCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTa                                                                                                                                       <  1:478895/141‑1 (MQ=255)          gTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACTATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGa                                                                                                                                   <  2:31569/141‑1 (MQ=255)          gTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGa                                                                                                                                   >  2:800968/1‑141 (MQ=255)          gTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGa                                                                                                                                   <  1:108482/141‑1 (MQ=255)               ttttATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGt                                                                                                                              >  2:674963/1‑141 (MQ=255)                  tATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTACTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTa                                                                                                                           <  2:773512/141‑1 (MQ=255)                  caattttttaaacaacatccagaagcggcaaataaaaatagtgtgattttacagaaaggtgatcgtatatattttgaatcgcaggcgattattaaactaatcacagcactacctaatcgaactAAATTACGGACTGGTTTa                                                                                                                           <  1:409864‑M1/18‑1 (MQ=255)                   atcaatcaGTTAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAg                                                                                                                          <  2:317772/141‑1 (MQ=255)                   atcaatcaGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAg                                                                                                                          >  2:173836/1‑141 (MQ=255)                   atcaatcaGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAg                                                                                                                          <  2:17879/141‑1 (MQ=255)                    tcaatcaGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAgg                                                                                                                         >  1:177564/1‑141 (MQ=255)                    tcaatcaGTAAGTTTTACATTCGCATTATCATCTAAAAAGAACGATTTTTCATAAGCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTGCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAgg                                                                                                                         <  2:1004398/141‑1 (MQ=255)                     caatcaGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGt                                                                                                                        >  2:42019/1‑141 (MQ=255)                       atcaGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTGTTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGATaa                                                                                                                      >  2:180153/1‑140 (MQ=255)                          aGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATCATCCTTTGGTTGGTGCCATGTTGTTTTCCACATTCTATATCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAAGTACaac                                                                                                                   >  2:225052/1‑140 (MQ=255)                          aGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCAGTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAg                                                                                                                   >  1:464319/1‑141 (MQ=255)                            tAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGcc                                                                                                                 >  1:607070/1‑141 (MQ=255)                               gTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATa                                                                                                              <  2:1068816/141‑1 (MQ=255)                                 tttACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACACGCCATaaa                                                                                                            <  2:109622/141‑1 (MQ=255)                                   tACTTTCGGATTATCAGCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAAcc                                                                                                          <  1:298957/141‑1 (MQ=255)                                     cTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCtt                                                                                                        >  1:416028/1‑140 (MQ=255)                                         cGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGcc                                                                                                    >  1:650073/1‑141 (MQ=255)                                         cGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGcc                                                                                                    >  2:1080327/1‑141 (MQ=255)                                           cATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGTTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCa                                                                                                  >  2:1093568/1‑141 (MQ=255)                                             ttATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCaat                                                                                                >  1:1157375/1‑141 (MQ=255)                                             gcaaataaaaatagtgtgattttacagaaaggtgatcgtatatattttgaatcgcaggcgattattaaactaatcacagcactacctaatcgaactAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCaat                                                                                                >  1:172072‑M1/97‑141 (MQ=255)                                             gcaaataaaaatagtgtgattttacagaaaggtgatcgtatatattttgaatcgcaggcgattattaaactaatcacagcactacctaatcgaactAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCaat                                                                                                >  1:720284‑M1/97‑141 (MQ=255)                                              tATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCaata                                                                                               <  1:585745/141‑1 (MQ=255)                                               atcatcTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCaataa                                                                                              >  1:293568/1‑141 (MQ=255)                                               atcatcTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCaataa                                                                                              >  2:1102139/1‑141 (MQ=255)                                               atcatcTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCaataa                                                                                              >  1:1103930/1‑141 (MQ=255)                                                  atcTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAGGCCATAAACCTACGCCCAATAAttt                                                                                           >  1:962198/1‑141 (MQ=255)                                                   aaaaatagtgtgattttacagaaaggtgatcgtatatattttgaatcgcaggcgattattaaactaatcacagcactacctaatcgaactAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTa                                                                                          >  2:409864‑M1/91‑141 (MQ=255)                                                     tAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTCTTATTAGCAAACATTCGATAACCGCAATTACGGACTGGTTTAGGTACAAGCCATTAACCTACGGCCAATAATTTatt                                                                                        >  1:356991/1‑139 (MQ=255)                                                         aaGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGa                                                                                    >  2:1112811/1‑141 (MQ=255)                                                             aCGATTTTTCTTTTTTTTTTGGTTGGTGCCATGTTGTTTTCCACAATCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTAGATTAGGTACAAGCCATAAACTTACGCCCAATAATTTAGTTCTATTAg                                                                                >  2:364822/1‑141 (MQ=255)                                                              cgttttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAgg                                                                               <  2:942079/138‑1 (MQ=255)                                                              cGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGCCTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAgg                                                                               <  2:1153154/141‑1 (MQ=255)                                                               gATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGt                                                                              <  1:674963/141‑1 (MQ=255)                                                               gATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATCTAAAATATTAGCAAACATTCGATAACCGAAATTACGGACAGGTTTAGGTACAAGCCATAAACCTAAGCCCAATAATTTGGTTCGATTAgtt                                                                              >  1:102318/1‑139 (MQ=255)                                                                ttttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTTGATAACCGAAATGACGTACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTa                                                                             <  2:52741/140‑1 (MQ=255)                                                                 tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                            <  1:98721/141‑1 (MQ=255)                                                                 tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                            >  1:1186283/1‑141 (MQ=255)                                                                 tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                            <  2:660917/141‑1 (MQ=255)                                                                 tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                            >  1:691279/1‑141 (MQ=255)                                                                        tAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGACCAATAATTTAGTTCGATTAGGTAGTGCtgtg                                                                     >  1:808931/1‑141 (MQ=255)                                                                         taTCATTTGGTTGGTGGCATGTTGTTTGCCACATTCTATTTCTATTAATAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGa                                                                    <  1:119868/140‑1 (MQ=255)                                                                              tttGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTATGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGt                                                               >  1:417873/1‑141 (MQ=255)                                                                              tttGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGt                                                               >  1:216821/1‑141 (MQ=255)                                                                              tttGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGt                                                               >  2:1045026/1‑141 (MQ=255)                                                                                     ggtGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAGTAATTTAGTTCGATTAGGTGGTGCTGTGATTAGTGtaataa                                                        >  2:1119338/1‑141 (MQ=255)                                                                                      gtaccATGTTGTTTCCCACAGTCTATTTCTATAATTAGCAAACATTCGATAACCGAAATTACTGACCGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTaataat                                                       <  2:356991/138‑1 (MQ=255)                                                                                      gtGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTaataat                                                       <  1:1067945/141‑1 (MQ=255)                                                                                       tGCCGTGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATc                                                      >  2:80083/1‑141 (MQ=255)                                                                                         ccATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGc                                                    <  1:17741/141‑1 (MQ=255)                                                                                          cATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGcc                                                   >  2:198339/1‑141 (MQ=255)                                                                                            tgttgtTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTg                                                 <  1:1095178/141‑1 (MQ=255)                                                                                            tgttgtTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTg                                                 <  1:603541/141‑1 (MQ=255)                                                                                             tttgttTTCCACATTCTATTTCTATTCTTACAAAACATTCGATAACCGAAATTATGGACTGGTTTAGGTACAAGCCATAAAACTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGTTTATTTTAATAATCGCCTGc                                                <  1:288896/140‑1 (MQ=255)                                                                                              ttgttCTCCACATTCGATTTCTGTTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCg                                               <  2:123221/141‑1 (MQ=255)                                                                                                 ttctCCACATTCGTTTTCTATAATCAGCAAACAGTCTATAACCGAAATTACGGCCTGGTTTAGGTACAAGCCATAAACCTACGCCTAATAATTTAGTTCCATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGAtt                                            <  2:43676/138‑1 (MQ=255)                                                                                                   ttCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCa                                          <  2:1186283/141‑1 (MQ=255)                                                                                                       acaTTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGTTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAat                                      >  2:372775/1‑141 (MQ=255)                                                                                                          ttctatttctatTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAatata                                   >  2:1122661/1‑141 (MQ=255)                                                                                                           tctatctctattATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAatatat                                  <  2:871791/141‑1 (MQ=255)                                                                                                              atttctattATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACg                               >  1:833864/1‑141 (MQ=255)                                                                                                              atttctattATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACg                               >  1:699525/1‑141 (MQ=255)                                                                                                              atttctattATTAGCAAAAATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACg                               <  2:245958/141‑1 (MQ=255)                                                                                                                    attattAGCAAACATTCGATGACGGAAATTGCGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATGCGATGAcc                         >  2:966108/1‑141 (MQ=255)                                                                                                                    attattAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCAcc                         >  1:504745/1‑141 (MQ=255)                                                                                                                     ttattaGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACACGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTCGTTTAATAATCGCCTGTGATTCACAATAGTTACGATCGCCt                        >  2:1099920/1‑141 (MQ=255)                                                                                                                          tgCAAACATTCGATAACCGAATTTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTTATTATTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTg                   <  2:962301/140‑1 (MQ=255)                                                                                                                          aGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTg                   >  1:1191607/1‑141 (MQ=255)                                                                                                                           tcAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGt                  <  2:1198991/140‑1 (MQ=255)                                                                                                                            cAAACATTCGATAACCGAAAATACGGACTGGTTTAGGTACAAGCTATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCAGAGATTAGTTTAATAATCGCCGGCGATTCAAAATATATACGATCACCTTTCTGTa                 >  2:654469/1‑141 (MQ=255)                                                                                                                             aaaCATTCGATAACCGAAATTACGGACTTGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTaa                <  2:934052/141‑1 (MQ=255)                                                                                                                             aaaCATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTaa                <  2:685254/141‑1 (MQ=255)                                                                                                                             aaaCATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTaa                <  1:261428/141‑1 (MQ=255)                                                                                                                                   tCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCGTTCTGTAAAAtaaa          >  1:40776/1‑138 (MQ=255)                                                                                                                                    cGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATcaca         >  1:803211/1‑141 (MQ=255)                                                                                                                                    cGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATcaca         >  1:132303/1‑141 (MQ=255)                                                                                                                                     gATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCacac        >  2:1075524/1‑141 (MQ=255)                                                                                                                                     gATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCacac        >  2:1075511/1‑141 (MQ=255)                                                                                                                                         aCCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtt    <  1:800968/141‑1 (MQ=255)                                                                                                                                           cGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGGCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtttt  >  1:819011/1‑141 (MQ=255)                                                                                                                                           cGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtttt  <  1:641620/141‑1 (MQ=255)                                                                                                                                           cGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtttt  >  1:1055641/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                           AATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTT  >  USA300TCH1516_ALE/2257092‑2257370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.