New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2257232 =	80 (0.780)	4 (0.040)	3/248	NT	5.2%	coding (293/414 nt)	USA300HOU_RS11555	hypothetical protein
	?	USA300TCH1516_ALE	2257282 =	71 (0.730)					coding (243/414 nt)	USA300HOU_RS11555	hypothetical protein

TCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAACTTCACCTTT  >  USA300TCH1516_ALE/2257142‑2257422                                                                                                                                             |                                                                                                                                             aaaaatagtgtgattttacagaaaggtgatcgtatatattttgaatcgcaggcgattattaaactaatcacagcactacctaatcgaactAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTa                                                                                                                                              >  2:409864‑M1/91‑141 (MQ=255)   tAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTCTTATTAGCAAACATTCGATAACCGCAATTACGGACTGGTTTAGGTACAAGCCATTAACCTACGGCCAATAATTTatt                                                                                                                                            >  1:356991/1‑139 (MQ=255)       aaGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGa                                                                                                                                        >  2:1112811/1‑141 (MQ=255)           aCGATTTTTCTTTTTTTTTTGGTTGGTGCCATGTTGTTTTCCACAATCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTAGATTAGGTACAAGCCATAAACTTACGCCCAATAATTTAGTTCTATTAg                                                                                                                                    >  2:364822/1‑141 (MQ=255)            cgttttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAgg                                                                                                                                   <  2:942079/138‑1 (MQ=255)            cGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGCCTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAgg                                                                                                                                   <  2:1153154/141‑1 (MQ=255)             gATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGt                                                                                                                                  <  1:674963/141‑1 (MQ=255)             gATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATCTAAAATATTAGCAAACATTCGATAACCGAAATTACGGACAGGTTTAGGTACAAGCCATAAACCTAAGCCCAATAATTTGGTTCGATTAgtt                                                                                                                                  >  1:102318/1‑139 (MQ=255)              ttttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTTGATAACCGAAATGACGTACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTa                                                                                                                                 <  2:52741/140‑1 (MQ=255)               tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                                                                                >  1:1186283/1‑141 (MQ=255)               tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                                                                                <  1:98721/141‑1 (MQ=255)               tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                                                                                >  1:691279/1‑141 (MQ=255)               tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                                                                                <  2:660917/141‑1 (MQ=255)                      tAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGACCAATAATTTAGTTCGATTAGGTAGTGCtgtg                                                                                                                         >  1:808931/1‑141 (MQ=255)                       taTCATTTGGTTGGTGGCATGTTGTTTGCCACATTCTATTTCTATTAATAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGa                                                                                                                        <  1:119868/140‑1 (MQ=255)                            tttGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTATGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGt                                                                                                                   >  1:417873/1‑141 (MQ=255)                            tttGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGt                                                                                                                   >  1:216821/1‑141 (MQ=255)                            tttGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGt                                                                                                                   >  2:1045026/1‑141 (MQ=255)                                   ggtGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAGTAATTTAGTTCGATTAGGTGGTGCTGTGATTAGTGtaataa                                                                                                            >  2:1119338/1‑141 (MQ=255)                                    gtaccATGTTGTTTCCCACAGTCTATTTCTATAATTAGCAAACATTCGATAACCGAAATTACTGACCGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTaataat                                                                                                           <  2:356991/138‑1 (MQ=255)                                    gtGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTaataat                                                                                                           <  1:1067945/141‑1 (MQ=255)                                     tGCCGTGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATc                                                                                                          >  2:80083/1‑141 (MQ=255)                                       ccATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGc                                                                                                        <  1:17741/141‑1 (MQ=255)                                        cATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGcc                                                                                                       >  2:198339/1‑141 (MQ=255)                                          tgttgtTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTg                                                                                                     <  1:603541/141‑1 (MQ=255)                                          tgttgtTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTg                                                                                                     <  1:1095178/141‑1 (MQ=255)                                           tttgttTTCCACATTCTATTTCTATTCTTACAAAACATTCGATAACCGAAATTATGGACTGGTTTAGGTACAAGCCATAAAACTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGTTTATTTTAATAATCGCCTGc                                                                                                    <  1:288896/140‑1 (MQ=255)                                            ttgttCTCCACATTCGATTTCTGTTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCg                                                                                                   <  2:123221/141‑1 (MQ=255)                                               ttctCCACATTCGTTTTCTATAATCAGCAAACAGTCTATAACCGAAATTACGGCCTGGTTTAGGTACAAGCCATAAACCTACGCCTAATAATTTAGTTCCATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGAtt                                                                                                <  2:43676/138‑1 (MQ=255)                                                 ttCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCa                                                                                              <  2:1186283/141‑1 (MQ=255)                                                     acaTTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGTTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAat                                                                                          >  2:372775/1‑141 (MQ=255)                                                        ttctatttctatTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAatata                                                                                       >  2:1122661/1‑141 (MQ=255)                                                         tctatctctattATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAatatat                                                                                      <  2:871791/141‑1 (MQ=255)                                                            atttctattATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACg                                                                                   >  1:699525/1‑141 (MQ=255)                                                            atttctattATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACg                                                                                   >  1:833864/1‑141 (MQ=255)                                                            atttctattATTAGCAAAAATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACg                                                                                   <  2:245958/141‑1 (MQ=255)                                                                  attattAGCAAACATTCGATGACGGAAATTGCGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATGCGATGAcc                                                                             >  2:966108/1‑141 (MQ=255)                                                                  attattAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCAcc                                                                             >  1:504745/1‑141 (MQ=255)                                                                   ttattaGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACACGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTCGTTTAATAATCGCCTGTGATTCACAATAGTTACGATCGCCt                                                                            >  2:1099920/1‑141 (MQ=255)                                                                        tgCAAACATTCGATAACCGAATTTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTTATTATTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTg                                                                       <  2:962301/140‑1 (MQ=255)                                                                        aGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTg                                                                       >  1:1191607/1‑141 (MQ=255)                                                                         tcAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGt                                                                      <  2:1198991/140‑1 (MQ=255)                                                                          cAAACATTCGATAACCGAAAATACGGACTGGTTTAGGTACAAGCTATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCAGAGATTAGTTTAATAATCGCCGGCGATTCAAAATATATACGATCACCTTTCTGTa                                                                     >  2:654469/1‑141 (MQ=255)                                                                           aaaCATTCGATAACCGAAATTACGGACTTGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTaa                                                                    <  2:934052/141‑1 (MQ=255)                                                                           aaaCATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTaa                                                                    <  2:685254/141‑1 (MQ=255)                                                                           aaaCATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTaa                                                                    <  1:261428/141‑1 (MQ=255)                                                                                 tCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCGTTCTGTAAAAtaaa                                                              >  1:40776/1‑138 (MQ=255)                                                                                  cGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATcaca                                                             >  1:803211/1‑141 (MQ=255)                                                                                  cGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATcaca                                                             >  1:132303/1‑141 (MQ=255)                                                                                   gATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCacac                                                            >  2:1075524/1‑141 (MQ=255)                                                                                   gATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCacac                                                            >  2:1075511/1‑141 (MQ=255)                                                                                       aCCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtt                                                        <  1:800968/141‑1 (MQ=255)                                                                                         cGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGGCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtttt                                                      >  1:819011/1‑141 (MQ=255)                                                                                         cGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtttt                                                      <  1:641620/141‑1 (MQ=255)                                                                                         cGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtttt                                                      >  1:1055641/1‑141 (MQ=255)                                                                                          taaattattgggcgtaggtttatggcttgtacctaaaccagtccgtaatttAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAttttt                                                     >  2:409864‑M2/52‑141 (MQ=255)                                                                                            AATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTAt                                                   >  2:650073‑M1/1‑141 (MQ=255)                                                                                              TTACGGACTGGTATAGGTACACGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTAttt                                                 <  1:618476‑M1/141‑1 (MQ=255)                                                                                               TACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTg                                                >  2:764565‑M1/1‑141 (MQ=255)                                                                                               TACGGACTGGCTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTg                                                >  1:716‑M1/1‑141 (MQ=255)                                                                                                attgggcgtaggtttatggcttgtacctaaaccagtccgtaatttAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGc                                               >  1:172072‑M2/46‑141 (MQ=255)                                                                                                attgggcgtaggtttatggcttgtacctaaaccagtccgtaatttAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGc                                               >  1:720284‑M2/46‑141 (MQ=255)                                                                                                ACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGc                                               >  2:1144100‑M1/1‑141 (MQ=255)                                                                                                 cGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGcc                                              >  2:572354/1‑141 (MQ=255)                                                                                                  ggtcTGGTTCAGGTACCAGCCATCAACCTACGCCCCATAATTTAGTGCGAGTCGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGCTTCTTAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCg                                             <  1:398605/138‑1 (MQ=255)                                                                                                  ggACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATGAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGccc                                             >  2:252725/1‑140 (MQ=255)                                                                                                     cTGGTTTAGGTACAAGCCATAACCCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCtt                                          <  1:763446/141‑1 (MQ=255)                                                                                                        gTTTAGGTACAAGCCATAAATCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTg                                       <  1:866453/141‑1 (MQ=255)                                                                                                        gTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTg                                       <  1:842191/141‑1 (MQ=255)                                                                                                         tttAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTgg                                      <  1:1112811/141‑1 (MQ=255)                                                                                                                   aGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTa                            <  1:1045026/141‑1 (MQ=255)                                                                                                                    cccACAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTaa                           <  2:821149/140‑1 (MQ=255)                                                                                                                        tAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTaaaaaa                       <  1:1083017/141‑1 (MQ=255)                                                                                                                        tAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTaaaaaa                       >  2:209663/1‑141 (MQ=255)                                                                                                                        tAAACCTACGCCCAATAATTTAGTACGTGTAGGTAGTGCTGTGATGAGATTAATAATCGCCTGCGGTTCAAAAAAGATACGATCACCTTTGTGTAAAATCACACTAGTTTTATTCGCCGGTTCTGGGGGTTGGTTtaaata                       >  2:154855/1‑139 (MQ=255)                                                                                                                          aaCCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAAtt                     >  1:488445/1‑141 (MQ=255)                                                                                                                           taaaccagtccgtaatttAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAAttg                    <  1:409864‑M2/123‑1 (MQ=255)                                                                                                                           aCCTACGACCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAAttg                    <  2:753972/141‑1 (MQ=255)                                                                                                                              tACGCCCAATAATTTAGTTCGATTAGGTAGTTCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGTTGTTGTTTAAAAAAttgttg                 <  1:728070/141‑1 (MQ=255)                                                                                                                              tACGCCCAATAATTTAGTGCGATTATGTATTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAAttgttg                 <  1:559798/141‑1 (MQ=255)                                                                                                                                cGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGc               >  1:1128699/1‑141 (MQ=255)                                                                                                                                 gCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGcc              <  1:1125466/141‑1 (MQ=255)                                                                                                                                 ccccAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGcc              <  2:177564/140‑1 (MQ=255)                                                                                                                                 ccccAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGcc              <  1:42019/140‑1 (MQ=255)                                                                                                                                    cAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAACATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAAc           <  2:962198/141‑1 (MQ=255)                                                                                                                                    cAATAATTTAGTGCGATCAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTTAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAAc           <  2:229879/141‑1 (MQ=255)                                                                                                                                      ataatTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAACtt         >  2:988143/1‑141 (MQ=255)                                                                                                                                       taatttAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAACTTc        >  2:473523‑M2/7‑141 (MQ=255)                                                                                                                                             aGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAACTTCACCttt  <  2:1170392/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                             TCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAACTTCACCTTT  >  USA300TCH1516_ALE/2257142‑2257422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.