mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1744053 | 92 (0.900) | 3 (0.030) | 3/246 | NT | 3.6% | intergenic (‑307/+100) | relA/apt | GTP pyrophosphokinase/Adenine phosphoribosyltransferase |
| ? | USA300TCH1516_ALE | = 1744121 | 74 (0.770) | intergenic (‑375/+32) | relA/apt | GTP pyrophosphokinase/Adenine phosphoribosyltransferase | |||||
| * | ? | USA300TCH1516_ALE | 1343877 = | 83 (0.810) | 3 (0.030) | 3/248 | NT | 3.9% | coding (14/267 nt) | USA300HOU_RS06655 | hypothetical protein |
| ? | USA300TCH1516_ALE | 1343895 = | 69 (0.710) | coding (32/267 nt) | USA300HOU_RS06655 | hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 1131177 = | 110 (1.080) | 4 (0.040) | 3/242 | NT | 3.8% | coding (849/927 nt) | glpQ1 | putative glycerophosphodiester phosphodiesterase 1 |
| ? | USA300TCH1516_ALE | 1131203 = | 102 (1.080) | coding (823/927 nt) | glpQ1 | putative glycerophosphodiester phosphodiesterase 1 | |||||
| * | ? | USA300TCH1516_ALE | 864131 = | 93 (0.910) | 3 (0.030) | 3/254 | NT | 3.1% | coding (321/459 nt) | USA300HOU_RS04210 | hypothetical protein |
| ? | USA300TCH1516_ALE | 864198 = | 94 (0.940) | coding (388/459 nt) | USA300HOU_RS04210 | hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 810093 | 122 (1.200) | 3 (0.030) | 3/246 | NT | 2.6% | intergenic (+24/‑94) | nrdE1/nrdF | Ribonucleoside‑diphosphate reductase subunit alpha 1/Ribonucleoside‑diphosphate reductase subunit beta |
| ? | USA300TCH1516_ALE | = 810144 | 107 (1.110) | intergenic (+75/‑43) | nrdE1/nrdF | Ribonucleoside‑diphosphate reductase subunit alpha 1/Ribonucleoside‑diphosphate reductase subunit beta | |||||
| * | ? | USA300TCH1516_ALE | = 782423 | 78 (0.760) | 3 (0.030) | 3/240 | NT | 3.8% | intergenic (‑218/+124) | USA300HOU_RS03820/USA300HOU_RS03825 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 782442 | 78 (0.830) | intergenic (‑237/+105) | USA300HOU_RS03820/USA300HOU_RS03825 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | = 2937 | 1993 (1.010) | 20 (0.010) | 10/250 | NT | 1.1% | intergenic (‑263/–) | USA300HOU_RS14900/– | hypothetical protein/– |
| ? | NC_012417 | = 2949 | 1789 (0.940) | intergenic (‑275/–) | USA300HOU_RS14900/– | hypothetical protein/– | |||||
| * | ? | NC_012417 | = 1982 | 1643 (0.830) | 9 (0.000) | 6/246 | NT | 0.57% | intergenic (+215/+111) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | = 2027 | 1586 (0.850) | intergenic (+260/+66) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | 1964 = | 1687 (0.860) | 9 (0.000) | 6/238 | NT | 0.57% | intergenic (+197/+129) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | 2053 = | 1582 (0.880) | intergenic (+286/+40) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | = 1954 | 1709 (0.870) | 10 (0.010) | 6/244 | NT | 0.64% | intergenic (+187/+139) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | = 2064 | 1497 (0.810) | intergenic (+297/+29) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||