New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2660570 =	42 (0.920)	4 (0.100)	4/234	NT	10.1%	intergenic (+12/+237)	ldhD_1/ybiV	D‑lactate dehydrogenase/Sugar phosphatase YbiV
	?	USA300TCH1516_ALE	2660603 =	33 (0.800)					intergenic (+45/+204)	ldhD_1/ybiV	D‑lactate dehydrogenase/Sugar phosphatase YbiV

TCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2660719‑2660570 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctttgcttttTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGA  >  USA300TCH1516_ALE/2660603‑2660737                                                                                                                                                                                                                                                                                               TCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGC                                                                                                                                                   <  2:110056/140‑1   TCAAACAGCTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCT                                                                                                                                                 <  2:211960/140‑1      AACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTG                                                                                                                                              <  1:484242/140‑1       ACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGAAAAGGCACATGGCGCGCCTTTGC                                                                                                                                             >  1:51493/1‑140        CAGGTTAGGCACTAATGCCATAGTAAAATAACCGCACTCAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAAATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCCTTGCT                                                                                                                                            >  1:13576/1‑140         AGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAAGCACATGGCACGCCTTTGCTT                                                                                                                                           >  1:41305/1‑140                                           ACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCGCGCCATGTGCCTTTGCTCTTTATTTTGTATATCTGTATCAAAATCGATTTGA                                                                                                         <  1:348878/140‑1                                             TAAATTCATTTGAATAGATAATAAAATTAAGCGGATTCTAATCAAATCGATTTTGATACATATATACAAAATAAAAATCAAATGCACATGGCGCGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATT                                                                                                       <  2:180755/140‑1                                                                                                                        agGCAAAGGCACATGGCTCGTCTTTGTTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCT                            <  2:348878/138‑1                                                                                                                                  ACATGGCGCGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATA                  >  2:362677/1‑140                                                                                                                                            CCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGTTTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATT        <  1:199709/140‑1                                                                                                                                            CCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATT        <  2:521241/140‑1                                                                                                                                            CCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTACCATCTATTCAAATGATTTTATTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATT        <  2:442575/140‑1                                                                                                                                                  CTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGTTGA  >  2:506494/1‑140                                                                                                                                                                                                                                                                                               TCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2660719‑2660570 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctttgcttttTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGA  >  USA300TCH1516_ALE/2660603‑2660737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.