New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	52495 =	65 (0.730)	94 (1.070) +T	3/276	11.5	58.0%	intergenic (+105/‑568)	USA300HOU_RS00215/USA300HOU_RS00220	hypothetical protein/hypothetical protein
	?	USA300TCH1516_ALE	= 52988	72 (0.810)					intergenic (+598/‑75)	USA300HOU_RS00215/USA300HOU_RS00220	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

TAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTT  >  USA300TCH1516_ALE/52363‑52629                                                                                                                                      |                                                                                                                                       tAAAACATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAaat                                                                                                                                 <  2:252694/140‑1 (MQ=255)         taaaTGCATTAAAGAAAAAGTTATTCAATGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCagag                                                                                                                         <  1:37228/137‑1 (MQ=255)         tAGATGCCTTAAAGAAATATTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCagag                                                                                                                         <  1:522724/140‑1 (MQ=255)            aTGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGaa                                                                                                                      <  1:294824/140‑1 (MQ=255)              gCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATc                                                                                                                    <  2:488948/140‑1 (MQ=255)                 ttAAAGAAATATTTTTTAACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                                                                                 <  2:932149/140‑1 (MQ=255)                 ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                                                                                 <  1:1007245/140‑1 (MQ=255)                 ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                                                                                 >  1:395777/1‑140 (MQ=255)                 ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                                                                                 <  2:343148/140‑1 (MQ=255)                 ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                                                                                 <  2:639887/140‑1 (MQ=255)                 ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAAAGTAGTCTTAATCGTTCTGAAATACGAAAAAAGTT‑GTGGAAAACGCGTGAAAGAATCAGAAGAAttggt                                                                                                                 >  1:117506/1‑136 (MQ=255)                  tAAAGAAATAGTATTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGttt                                                                                                                <  1:450260/140‑1 (MQ=255)                   aaaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTg                                                                                                               <  2:72286/140‑1 (MQ=255)                    aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGa                                                                                                              >  2:966898/1‑140 (MQ=255)                    aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTATGa                                                                                                              >  1:812539/1‑140 (MQ=255)                     aGAAATAGTTTTTGACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTGTTAATCGTTCTGAAATACGAAAAATCTT‑GTGGCACTTAACATATTCAATCAGAGGAATCGTTTGaa                                                                                                             <  1:739610/140‑1 (MQ=255)                     aGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                                                                             >  1:865311/1‑140 (MQ=255)                       aaaTAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTCAAATAATCAGAGGAATCGTTTGAAat                                                                                                           >  1:312613/1‑140 (MQ=255)                       aaaTAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAA‑AAAAGGAATGTTAGGGGAACTCGAGTGAAATAATCAGAGGAATCGTTTGAAat                                                                                                           >  1:982400/1‑140 (MQ=255)                         aTAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGAAAATGTAGTCTTAATCGTTAGGAAAAACGAAACATGTT‑GTGGAAGTCGCGGGAAAAAATCAGAGAGAACGTTTGgaagcc                                                                                                         >  1:416191/1‑137 (MQ=255)                           aGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGCGGAATCGTTTGAAatcatc                                                                                                       <  1:1007623/140‑1 (MQ=255)                            gTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCGGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCg                                                                                                      >  1:648484/1‑140 (MQ=255)                            gTTTTTCACTGAAAATATTTATAGATATAATTAAAAATAATTAATATTAAGCCAGGATAATGTAGTCCTAATCGTTCTGAAATACGAAAAAGGTT‑GTGGAAATCGCGTGAAATAATCAGGGGCATCGTTTGAAGTCATCg                                                                                                      >  1:104474/1‑140 (MQ=255)                               tttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                                                                                   >  1:127299/1‑140 (MQ=255)                                  cACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGGTAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTaa                                                                                                >  1:67584/1‑140 (MQ=255)                                   aCTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCACGTGAAATAATCAGAGGAAACGTTTGAAATCATGgaagtacg                                                                                               >  2:518605/1‑138 (MQ=39)                                       aaaaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                           <  1:413784/140‑1 (MQ=255)                                        aaaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgc                                                                                          <  1:656903/140‑1 (MQ=255)                                         aaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                                                                         >  2:341739/1‑140 (MQ=255)                                           tatTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa                                                                                       <  1:634469/140‑1 (MQ=255)                                              ttATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAACCAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                                                                                    <  1:33511/140‑1 (MQ=255)                                                   gttataATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATGGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt                                                                               <  2:657476/138‑1 (MQ=255)                                                    atatAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTg                                                                              <  1:907240/140‑1 (MQ=255)                                                             aaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTCATCGAGCGAAAATCACGTTAaataataa                                                                     >  1:945849/1‑138 (MQ=255)                                                                  aattaatAGTAAGCCAGGATAAGGTAATCTTAATCGTTCTGAAAGACGAAAAATGTT‑GTGCGAAGCGGGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGa                                                                <  1:477970/140‑1 (MQ=21)                                                                    ttaatATTAAGCCAGGCTAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAAGCGTTTGAAAGCATCGTAGTAATCGCGCGAAACTCACGGGAAATGATCAGAGGAAt                                                              >  2:694371/1‑140 (MQ=25)                                                                    ttaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATAAGAGGAAt                                                              >  1:63138/1‑140 (MQ=255)                                                                        tatTAAGCCATGATAATGTAGTCTTAATCTTTTTGAAATAAGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGATTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt                                                          <  1:960397/140‑1 (MQ=21)                                                                        tatTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt                                                          <  1:511918/140‑1 (MQ=255)                                                                        tatTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGCT‑GGGGAAATCGCGTGGCCTAAACAGATGAATAGATTCAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt                                                          <  1:235102/140‑1 (MQ=21)                                                                         atTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt                                                         <  1:807028/140‑1 (MQ=255)                                                                         atTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt                                                         <  1:807409/140‑1 (MQ=255)                                                                            aaGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa                                                      >  1:286379/1‑140 (MQ=255)                                                                                cAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatca                                                  >  1:715530/1‑140 (MQ=255)                                                                                    aTAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                              >  1:4470/1‑140 (MQ=255)                                                                                     tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgta                                             <  1:375513/140‑1 (MQ=255)                                                                                      aaTGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                            >  1:251247/1‑140 (MQ=255)                                                                                       aTGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtagt                                           >  1:367105/1‑140 (MQ=255)                                                                                        tGTAGTCTTAAACGTACTGAAATACGAAAAATGTT‑GTGGAAATCGGCTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtagta                                          <  2:780249/140‑1 (MQ=255)                                                                                           aGTCTTAATCGTTCTGAAATAGGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAATTAATCAGAGGAATCGTTTGAAATCATCGTAGTAATc                                       <  1:696044/140‑1 (MQ=255)                                                                                              cTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                    >  1:449393/1‑140 (MQ=255)                                                                                                 aaTCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                 >  1:867809/1‑140 (MQ=255)                                                                                                        cTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCAc                          <  1:589588/140‑1 (MQ=255)                                                                                                         agAAATACTAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAAGAATCTTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                         <  1:202609/139‑1 (MQ=255)                                                                                                          gAAATACGAAAAATGTT‑GTGGAAATCGCGTGACATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt                        >  1:720974/1‑140 (MQ=255)                                                                                                           aaaTACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACggg                       >  1:497987/1‑138 (MQ=255)                                                                                                           aaaTACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTg                       >  1:402372/1‑140 (MQ=255)                                                                                                                cGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCCCGTGAAATAATCAGGGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAaata                  >  2:222063/1‑140 (MQ=255)                                                                                                                  aaaaaTGTT‑GTGGAAATAGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataat                <  1:154344/140‑1 (MQ=255)                                                                                                                   aaaaTGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc               >  1:560483/1‑140 (MQ=255)                                                                                                                       agtt‑atGGAAATCGTGAGAAATAATCAGAGTATTCGTTTGAAATCATCGTAGTAATCTCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCagag           <  2:312613/139‑1 (MQ=11)                                                                                                                         tt‑gtGCTAATCGGGTGGAACAATCAGAGGATTCTTGTGAAATCATTGTAGTAATCTCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGa         <  1:91188/140‑1 (MQ=11)                                                                                                                            gtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt       >  1:857700/1‑140 (MQ=37)                                                                                                                              ggAAATCGCGTGAAATAATCATAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                             >  2:970979/1‑116 (MQ=25)                                                                                                                              ggAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                                                                                    <  2:230439/61‑1 (MQ=33)                                                                                                                              ggAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                                                                                    >  1:230439/1‑61 (MQ=33)                                                                                                                                 aaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt  <  1:966898/140‑1 (MQ=33)                                                                                                                                      |                                                                                                                                       TAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTT  >  USA300TCH1516_ALE/52363‑52629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.