New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	52495 =	65 (0.730)	94 (1.070) +T	3/276	11.5	58.0%	intergenic (+105/‑568)	USA300HOU_RS00215/USA300HOU_RS00220	hypothetical protein/hypothetical protein
	?	USA300TCH1516_ALE	= 52988	72 (0.810)					intergenic (+598/‑75)	USA300HOU_RS00215/USA300HOU_RS00220	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

AGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTG  >  USA300TCH1516_ALE/52861‑53127                                                                                                                                |                                                                                                                                            agtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGGGATCGTTTGAAATCATCGTAGTAGTAGCGCGAAAATCGCGTGGAAGAcg                                                                                                                                 >  2:932474/1‑139 (MQ=11)   taATCCCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTAt                                                                                                                               <  1:393235/140‑1 (MQ=25)    aaTCGCGCGAAAATCGCGTGAAATAATCAGAGAAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATg                                                                                                                              <  2:861769/140‑1 (MQ=37)     aTCGCGCGAAAATCCCGTGAAATAATCAGGGGAACCGTTTGAAATCAACGTAGTAATCGCGCGAAAATCGCGTGAAATAAGCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATgg                                                                                                                             <  1:557759/140‑1 (MQ=11)      tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGt                                                                                                                            <  1:329798/140‑1 (MQ=38)        gcgcgAAAATCCCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAg                                                                                                                          <  2:984064/140‑1 (MQ=37)         cgcgAAAATCGCGTGAAATAATCACAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGAGTGAAATACTATGGTAGa                                                                                                                         >  1:640903/1‑140 (MQ=255)            gAAAATCACCGGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACgg                                                                                                                      <  1:873858/140‑1 (MQ=255)                aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTg                                                                                                                  <  1:689986/140‑1 (MQ=255)                     tgaaaaTAATCAGAGGAATCGGTTGAAATCATCGTAGGAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaa                                                                                                             <  1:51760/137‑1 (MQ=255)                      tGAAATAATCAGGGGAATGGTTTGAAATGATCGTAGTGATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATAATCGCAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaaa                                                                                                            <  1:86294/140‑1 (MQ=17)                      tGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaaa                                                                                                            <  1:674915/140‑1 (MQ=255)                      tGAAATAATCAGAAGAACCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGAGCGAGTTACTATGGTAGACGGTTTGAGTaaa                                                                                                            <  2:461083/140‑1 (MQ=14)                          ataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTaa                                                                                                        <  1:387520/140‑1 (MQ=255)                          acaatCCGAGGAAACCTTCGCAATGATCGTAGTAATCCCGCGAAAATCCCCTGAAATAATCAGAGGAACCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTaa                                                                                                        <  2:253479/138‑1 (MQ=17)                           taatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAAt                                                                                                       <  1:891091/140‑1 (MQ=255)                           taatCAGAGGAATCGTTTGAAAGCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAAt                                                                                                       <  1:646175/140‑1 (MQ=255)                           taaaCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAAt                                                                                                       <  1:420661/140‑1 (MQ=255)                             atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGGGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAGGACTATGACAGACGGTTTGAGTAGATTAATgg                                                                                                     >  2:395198/1‑140 (MQ=14)                             atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGAAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATAGCGTGAAATACTATGGTAGACGGATAGAGAAAATTAAAgg                                                                                                     >  2:895501/1‑140 (MQ=14)                             atCAGAGGAATCATATTAAATCAACATAAGAATCGCGCAAAAATCGCGTGAAATAATCAGAGGAACCGTTTGAAATCAGCTTAGTCATCGCGCGAAAATCGCGTGAAATCCTATTGTAGACGGTTTGAGTAAATTAATgg                                                                                                     <  1:437196/140‑1 (MQ=17)                              tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGa                                                                                                    <  1:490806/140‑1 (MQ=255)                                aggggAATCGTTTGACATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGt                                                                                                  <  1:592501/137‑1 (MQ=255)                                  cggAAGCGTATGATATCATCGTACTATTCGCGCTAAAATCCCGGGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAt                                                                                                <  2:520593/139‑1 (MQ=18)                                   ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAtt                                                                                               <  1:692056/140‑1 (MQ=255)                                   ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAtt                                                                                               >  1:369526/1‑140 (MQ=255)                                          tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAatat                                                                                        <  1:356877/140‑1 (MQ=255)                                          tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAatat                                                                                        <  1:715615/140‑1 (MQ=255)                                          tttGAAATCATCGTAGTAAACGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAatat                                                                                        <  1:881938/140‑1 (MQ=255)                                               aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATg                                                                                   <  2:23991/140‑1 (MQ=255)                                                       tagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTggag                                                                           >  1:976502/1‑140 (MQ=255)                                                         gtaAGCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTggagga                                                                         <  1:678612/140‑1 (MQ=255)                                                          taATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGaa                                                                        >  2:478475/1‑140 (MQ=255)                                                          taATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGaa                                                                        >  2:906458/1‑140 (MQ=255)                                                          taATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGaa                                                                        <  1:133834/140‑1 (MQ=255)                                                                  caaaaaTCACGTGGAAACAGCAGAGGAATCGTTTGAAATCATCGTAGTAACCGCGCGAAAAACGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTg                                                                <  1:118868/138‑1 (MQ=37)                                                                    aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCa                                                              <  1:682422/140‑1 (MQ=255)                                                                    aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCa                                                              <  1:417459/140‑1 (MQ=255)                                                                        tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATTGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATaga                                                          <  1:680533/140‑1 (MQ=255)                                                                        tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATaga                                                          <  1:879952/140‑1 (MQ=255)                                                                          gggTGCAATAATGAGAGGAATCGTTTGAAATCATCGTATTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAgaga                                                        <  2:748540/138‑1 (MQ=255)                                                                          gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAgaga                                                        <  1:692731/140‑1 (MQ=255)                                                                          gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAACCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAgaga                                                        <  1:884580/140‑1 (MQ=255)                                                                          gcgTGAAATAATCAGAAGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAgaga                                                        <  1:14215/140‑1 (MQ=255)                                                                            gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaaa                                                      <  1:728147/140‑1 (MQ=255)                                                                            gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaaa                                                      <  1:365646/140‑1 (MQ=255)                                                                                 agaagcAGAGGAATCGTTTGAAACCAACGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaaa                                                 <  1:668807/135‑1 (MQ=255)                                                                                         agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAGTATATaga                                         >  1:672954/1‑140 (MQ=255)                                                                                         agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATTTATaga                                         >  2:329895/1‑140 (MQ=255)                                                                                         agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATaga                                         >  1:114737/1‑140 (MQ=255)                                                                                             aTCGTTTGAAATCATCGTAGTAAGCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGtat                                     <  1:433159/140‑1 (MQ=255)                                                                                                 tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGa                                 <  1:496123/140‑1 (MQ=255)                                                                                                           tcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATTGAGTATAAGAAATCACGaaa                       <  1:609967/140‑1 (MQ=255)                                                                                                             gtagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAg                     <  1:222063/140‑1 (MQ=255)                                                                                                                 taATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGAtt                 <  1:149550/140‑1 (MQ=255)                                                                                                                 taATAGCGCGAAAATTGCGTGAAATACTAGTGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGAtt                 <  2:295604/140‑1 (MQ=255)                                                                                                                 taAGCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGAtt                 <  2:596907/140‑1 (MQ=255)                                                                                                                     cgcgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCt             <  1:923451/140‑1 (MQ=255)                                                                                                                      gcgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGTGGATTCTAAAATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTa            <  1:230240/140‑1 (MQ=255)                                                                                                                       cgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGCATAAGAAATCACGAAAAGGCTTATCTaa           >  2:324018/1‑140 (MQ=255)                                                                                                                        gtgAAAATCGGGTGAAATACTTTGGTAGACGGTTTGAGTAAAGTAATGGATTATTTTAATATTTATGGTTTGGAGGACTTGCGTTGCATAGATAAAGTAAACATATAGAGTATAAGAACTCACGAAAAGGATTATCTAAt          <  2:332392/138‑1 (MQ=255)                                                                                                                         cgATAATTGCGTCAAATACTATGGTAGTCGGTTTGAGAAAAGTGATGTAGTATTTTTATATTGATTGTTTGGAAAAATTGCGCTGAATAGAGAAAGTAAATACGCAGAGTTTCAGAATTCACGAAAAGGATTATCTAATg         <  2:339043/140‑1 (MQ=255)                                                                                                                         cgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTACATATATAGAGTATAAGAAATCACGAAAAGAATTATATaaga         >  1:70901/1‑138 (MQ=255)                                                                                                                          gAAAATCGCGTGAACTACTATGGTAGACGGTTTGAGTAAATTCATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAACGTAAATATATAGAGTATAAGAAATCTCGAAAAGGATTATCTAATGa        <  1:707013/140‑1 (MQ=255)                                                                                                                          gAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGa        <  2:466785/140‑1 (MQ=255)                                                                                                                          gAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGa        <  1:285737/140‑1 (MQ=255)                                                                                                                              aTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGATTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATAtt    <  1:350151/140‑1 (MQ=255)                                                                                                                              aTCGCGTGAAATACTATGGTAGACGGTTTGAGGAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATAtt    <  2:24362/140‑1 (MQ=255)                                                                                                                               tCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGACAAGGATTATGTAATGTTCttt   >  2:836378/1‑140 (MQ=255)                                                                                                                               tCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATAttt   >  2:131053/1‑140 (MQ=255)                                                                                                                                cgcgTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTg  >  1:319887/1‑140 (MQ=255)                                                                                                                                cgcgTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCAAATTCTAtttt  >  1:787597/1‑139 (MQ=255)                                                                                                                                |                                                                                                                                            AGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTG  >  USA300TCH1516_ALE/52861‑53127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.