Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP000731	1433	1562	130	2 [1]	[1] 2	repA/USA300HOU_pUSA300HOUMR0003	replication protein A/hypothetical protein

AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTGCTTAAACAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGC  >  CP000731/1293‑1481                                                                                                                                            |                                                   aaaaaagGCAAGAAAGTGGAAGTGATTTAGAAAAAGGATTGTGTCGGAAACGTATATTAAGTTATGGTCGACTGCATAAACAAAAGCATAAAATTTGAAACTGAGCCGATTTCGAATATGGTTATTTGATTAATGCAAGt                                                    <  2:920700/140‑1 (MQ=255)                                                   cGTACGTTAAGTAAGGGTGGCAAGATTACAACAAACCATAACATTTTAAGAGTGGACGTTGTCGAAGATGGTAAGAGGATCAATGAAAGAGATGAAGCGAAAACGACAGACGAAGAAGGAAAAAGACATTCGATGACCGc  >  2:272258/1‑140 (MQ=255)                                                                                                                                            |                                                   AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTGCTTAAACAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAA‑AAAAAGCACATTCAATTACCGC  >  CP000731/1293‑1481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑