Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP000731	1433	1562	130	2 [1]	[1] 2	repA/USA300HOU_pUSA300HOUMR0003	replication protein A/hypothetical protein

AAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGAT  >  CP000731/1562‑1702  |                                                                                                                                            aaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataatttagcattttgaaatttcaa   >  1:48737‑M1/1‑49 (MQ=255)  aaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataattttgcttttcgaaattccaaa  >  1:152841‑M1/1‑48 (MQ=255)  |                                                                                                                                            AAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGAT  >  CP000731/1562‑1702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑