| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2561201 = | 54 (1.040) | 3 (0.060) | 3/232 | NT | 6.0% | intergenic (+30/+33) | USA300HOU_RS13195/cpdA | hypothetical protein/3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA |
| ? | USA300TCH1516_ALE | 2561237 = | 46 (0.990) | coding (804/807 nt) | cpdA | 3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA | |||||
ATTCGTAAAGAGAAAATGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATC > USA300TCH1516_ALE/2561061‑2561338 | ttatgggccatgttcattttcgtaaaagtgtgatagatgatggcagatgttatctctgtccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattt < 1:402518‑M1/1‑1 (MQ=255) tatgggccatgttcattttcgtaaaagtgtgatagatgatggcagatgttatctctgtccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTa < 2:292805‑M1/2‑1 (MQ=255) tgggccatgttcattttcgtaaaagtgtgatagatgatggcagatgttatctctgtccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTaaa < 2:213918‑M1/4‑1 (MQ=255) cGTAAAGAGAAAATGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATaaa > 1:345894/1‑141 (MQ=255) gggccaggttcattttcgtaaaagtgtgatagatgatggcagatgttatctctgtccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTaaaa > 1:464136‑M1/137‑141 (MQ=255) gTATAGAGAAAATGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGGGTGTAAAACATaaaa > 2:103454/1‑141 (MQ=255) aaGAGAAAATGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgc > 1:285599/1‑141 (MQ=255) aaaaaTGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCaa < 1:125532/140‑1 (MQ=255) gAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAAcctgac < 2:67749/141‑6 (MQ=255) aaTACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGta > 2:157311/1‑140 (MQ=255) aTACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCa < 1:566512/141‑1 (MQ=255) gCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGttt > 2:275409/1‑141 (MQ=255) tttAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTgc < 2:75133/141‑1 (MQ=255) aTTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAGCTGGGTGAGGTTTGCGCAt > 1:2839/1‑141 (MQ=255) aCCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTa > 2:50852/1‑141 (MQ=255) aCCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTa > 2:402924/1‑141 (MQ=255) aGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTaaaa > 2:501809/1‑140 (MQ=255) aGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAAAAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAt > 1:534276/1‑141 (MQ=255) aagaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTc < 2:417058/141‑1 (MQ=255) agaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCt < 1:562301/141‑1 (MQ=255) tGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTattatt > 1:85177/1‑141 (MQ=255) gCATTTATGTGCAATCACATTCCTATACAATTGAAAATCAGCAACAAAATAAACACACGTGAGTAAACACATGACTCGCGTGTGTAAATCATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTAttt < 1:108618/141‑1 (MQ=255) ttATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTAt < 1:347325/141‑1 (MQ=255) tgtgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGt > 2:325513/1‑141 (MQ=255) gtgCCACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAACATCCGCAAACTGGGTCAGGTATGCGCATTTTAAACTTCTATTATTTGTATCGtt > 1:416094/1‑140 (MQ=255) gCAACCATATTCATATACGAGTGAGAAGCAGCAACAAAAGAAACACAGGTACGTAAACACATTCCTCGCGTGTGGAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGtctc < 2:173249/141‑1 (MQ=255) aCCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTGAACGCTTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatt < 1:473330/141‑1 (MQ=255) aCCACATTCATATACAATTCAAAATCAGCAACAAAATAAACACCCGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatt < 1:544441/141‑1 (MQ=255) ccACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCattt > 2:402518/1‑141 (MQ=255) ccACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGCCAGGTTTGCGCATTTTAAATTTCTAATATTTGTATCGTCTCattt > 2:255961/1‑141 (MQ=255) aTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTAAGGTTTGCGCGTTTTAAATTTCTATTATTTGTATCGTCTCatttattt > 1:113200/1‑141 (MQ=255) tCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTcc > 1:289534/1‑141 (MQ=255) gaaataCAATTAAAAATCAGCAACCAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGAATTGCGCAATATCAATAGATATTGTTTGGATCGTCTCATTTATTTCCt > 2:428320/4‑141 (MQ=255) cATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCACATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCt < 2:295765/141‑1 (MQ=255) atatACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAAAACATTACTAGCGTGTGTAAAACATAACATGCGCAAACTGGGTCAGGTTGGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTg < 1:478944/141‑1 (MQ=255) gtaaaaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGCAAAACAGAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtc < 1:511517/139‑1 (MQ=255) gAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACCCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtct < 1:79959/141‑1 (MQ=255) ggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAACCTGACCCCGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttct < 1:412352‑M1/85‑1 (MQ=255) aaTCAGAAACAAAATAAACACACGTAAGTAAGCACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTTCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttct < 2:79216/141‑1 (MQ=255) aTCAGCAACAAAATAAACACACATAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTg < 2:147181/141‑1 (MQ=255) aTCAGAAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTg < 2:326596/141‑1 (MQ=255) tCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCGAACTGGGTCAGGTCGGCGCATGTAAAAGTGCGAGTATTTGGATCGTCTCATTTATTTCCTGGTAGATATGTTCTGa > 2:217350/1‑141 (MQ=255) tCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGa > 1:476230/1‑141 (MQ=255) cagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAACCTGACCCAGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGTTAAATATCTTCTGAACGc < 2:295123‑M1/91‑1 (MQ=255) agaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAACCTGACCCAGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGcc > 2:412352‑M1/50‑141 (MQ=255) aacaaAATAAACACACGTAAGTAAACACATTACACGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGACCGcc < 1:415367/141‑1 (MQ=255) aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTg > 2:350263/1‑141 (MQ=255) aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTg > 2:73494/1‑141 (MQ=255) aaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGt > 2:372975/1‑141 (MQ=255) aTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTCAATATCTTCTGAACGCCCTTGTc > 2:79448/1‑141 (MQ=255) acacacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTgg > 2:38917/1‑141 (MQ=255) cacacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTCTTCTTTGTAGCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTTTCTTGGa < 2:431206/141‑1 (MQ=255) cacacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGa > 1:65134/1‑141 (MQ=255) cacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATa > 2:98901/1‑141 (MQ=255) acGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAg > 1:555689/1‑141 (MQ=255) taaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGac > 1:328222/1‑141 (MQ=255) atcacaTGACTCGCGTGTGTAAAACCTAAAATTCGCAAACTGGGTCAGGTTTGCGCTTTTTAAATTCCTATCATTTTTAGCGTCCCATTTATTTCCTGGTACATATCTTCTGAACGCCATTGTCTGGGATAGCCTATaccc < 2:2839/139‑3 (MQ=255) ttACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACag > 1:499616/1‑141 (MQ=255) ttACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACag > 2:320746/1‑141 (MQ=255) gcgTGTGTAAAACATAAAATGCGCTAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATaa > 1:390810/1‑141 (MQ=255) tgtgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCCAGACACGGACAGAGATAACAt < 1:325513/141‑1 (MQ=255) tgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCt < 2:432016/141‑1 (MQ=255) tgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCt > 2:446594/1‑141 (MQ=255) aaaCATAAAATGCGCAAACTGGATCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCca > 2:446360/1‑141 (MQ=255) aCATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCcatc < 1:275409/141‑1 (MQ=255) | ATTCGTAAAGAGAAAATGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATC > USA300TCH1516_ALE/2561061‑2561338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |