New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2561201 =	54 (1.040)	3 (0.060)	3/232	NT	6.0%	intergenic (+30/+33)	USA300HOU_RS13195/cpdA	hypothetical protein/3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA
	?	USA300TCH1516_ALE	2561237 =	46 (0.990)					coding (804/807 nt)	cpdA	3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA

AGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCATAA  >  USA300TCH1516_ALE/2561099‑2561376                                                                                                                                           |                                                                                                                                            aGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTaaaa                                                                                                                                           >  2:501809/1‑140 (MQ=255) aGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAAAAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAt                                                                                                                                           >  1:534276/1‑141 (MQ=255)    aagaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTc                                                                                                                                        <  2:417058/141‑1 (MQ=255)     agaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCt                                                                                                                                       <  1:562301/141‑1 (MQ=255)           tGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTattatt                                                                                                                                 >  1:85177/1‑141 (MQ=255)            gCATTTATGTGCAATCACATTCCTATACAATTGAAAATCAGCAACAAAATAAACACACGTGAGTAAACACATGACTCGCGTGTGTAAATCATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTAttt                                                                                                                                <  1:108618/141‑1 (MQ=255)                ttATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTAt                                                                                                                            <  1:347325/141‑1 (MQ=255)                   tgtgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGt                                                                                                                         >  2:325513/1‑141 (MQ=255)                    gtgCCACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAACATCCGCAAACTGGGTCAGGTATGCGCATTTTAAACTTCTATTATTTGTATCGtt                                                                                                                        >  1:416094/1‑140 (MQ=255)                      gCAACCATATTCATATACGAGTGAGAAGCAGCAACAAAAGAAACACAGGTACGTAAACACATTCCTCGCGTGTGGAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGtctc                                                                                                                      <  2:173249/141‑1 (MQ=255)                         aCCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTGAACGCTTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatt                                                                                                                   <  1:473330/141‑1 (MQ=255)                         aCCACATTCATATACAATTCAAAATCAGCAACAAAATAAACACCCGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatt                                                                                                                   <  1:544441/141‑1 (MQ=255)                          ccACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCattt                                                                                                                  >  2:402518/1‑141 (MQ=255)                          ccACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGCCAGGTTTGCGCATTTTAAATTTCTAATATTTGTATCGTCTCattt                                                                                                                  >  2:255961/1‑141 (MQ=255)                              aTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTAAGGTTTGCGCGTTTTAAATTTCTATTATTTGTATCGTCTCatttattt                                                                                                              >  1:113200/1‑141 (MQ=255)                                tCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTcc                                                                                                            >  1:289534/1‑141 (MQ=255)                                 gaaataCAATTAAAAATCAGCAACCAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGAATTGCGCAATATCAATAGATATTGTTTGGATCGTCTCATTTATTTCCt                                                                                                           >  2:428320/4‑141 (MQ=255)                                 cATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCACATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCt                                                                                                           <  2:295765/141‑1 (MQ=255)                                  atatACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAAAACATTACTAGCGTGTGTAAAACATAACATGCGCAAACTGGGTCAGGTTGGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTg                                                                                                          <  1:478944/141‑1 (MQ=255)                                           gtaaaaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGCAAAACAGAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtc                                                                                                 <  1:511517/139‑1 (MQ=255)                                            gAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACCCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtct                                                                                                <  1:79959/141‑1 (MQ=255)                                               ggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaatttaaaatgcgcaaactgggtcaggtttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttct                                                                                             >  2:412352‑M2/93‑141 (MQ=255)                                               ggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAACCTGACCCCGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttct                                                                                             <  1:412352‑M1/85‑1 (MQ=255)                                               aaTCAGAAACAAAATAAACACACGTAAGTAAGCACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTTCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttct                                                                                             <  2:79216/141‑1 (MQ=255)                                                gcgttcagaagatatttaacaggaaataaatgagacgatacaaataatagaaatttaaaatgcgcaaactgggtcaggtttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTg                                                                                            <  2:295123‑M2/50‑1 (MQ=255)                                                aTCAGCAACAAAATAAACACACATAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTg                                                                                            <  2:147181/141‑1 (MQ=255)                                                aTCAGAAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTg                                                                                            <  2:326596/141‑1 (MQ=255)                                                 tCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCGAACTGGGTCAGGTCGGCGCATGTAAAAGTGCGAGTATTTGGATCGTCTCATTTATTTCCTGGTAGATATGTTCTGa                                                                                           >  2:217350/1‑141 (MQ=255)                                                 tCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGa                                                                                           >  1:476230/1‑141 (MQ=255)                                                     cagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAACCTGACCCAGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGTTAAATATCTTCTGAACGc                                                                                       <  2:295123‑M1/91‑1 (MQ=255)                                                      agaagatatttaccaggaaataaatgagacgatacaaataatagaaatttaaaatgcgcaaacggggtcaggtttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGcc                                                                                      <  1:412352‑M2/56‑1 (MQ=255)                                                      agaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAACCTGACCCAGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGcc                                                                                      >  2:412352‑M1/50‑141 (MQ=255)                                                      aacaaAATAAACACACGTAAGTAAACACATTACACGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGACCGcc                                                                                      <  1:415367/141‑1 (MQ=255)                                                          aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTg                                                                                  >  2:73494/1‑141 (MQ=255)                                                          aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTg                                                                                  >  2:350263/1‑141 (MQ=255)                                                           aaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGt                                                                                 >  2:372975/1‑141 (MQ=255)                                                            aTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTCAATATCTTCTGAACGCCCTTGTc                                                                                >  2:79448/1‑141 (MQ=255)                                                                acacacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTgg                                                                            >  2:38917/1‑141 (MQ=255)                                                                 cacacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTCTTCTTTGTAGCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTTTCTTGGa                                                                           <  2:431206/141‑1 (MQ=255)                                                                 cacacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGa                                                                           >  1:65134/1‑141 (MQ=255)                                                                   cacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATa                                                                         >  2:98901/1‑141 (MQ=255)                                                                    acGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAg                                                                        >  1:555689/1‑141 (MQ=255)                                                                           taaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGac                                                                 >  1:328222/1‑141 (MQ=255)                                                                             atcacaTGACTCGCGTGTGTAAAACCTAAAATTCGCAAACTGGGTCAGGTTTGCGCTTTTTAAATTCCTATCATTTTTAGCGTCCCATTTATTTCCTGGTACATATCTTCTGAACGCCATTGTCTGGGATAGCCTATaccc                                                               <  2:2839/139‑3 (MQ=255)                                                                                   ttACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACag                                                         >  1:499616/1‑141 (MQ=255)                                                                                   ttACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACag                                                         >  2:320746/1‑141 (MQ=255)                                                                                         gcgTGTGTAAAACATAAAATGCGCTAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATaa                                                   >  1:390810/1‑141 (MQ=255)                                                                                            tgtgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCCAGACACGGACAGAGATAACAt                                                <  1:325513/141‑1 (MQ=255)                                                                                              tgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCt                                              <  2:432016/141‑1 (MQ=255)                                                                                              tgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCt                                              >  2:446594/1‑141 (MQ=255)                                                                                                  aaaCATAAAATGCGCAAACTGGATCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCca                                          >  2:446360/1‑141 (MQ=255)                                                                                                    aCATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCcatc                                        <  1:275409/141‑1 (MQ=255)                                                                                                      tttattTGCGCATACTGGGTCAGGTTTTCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCTTAGACACGGACAGAGATAACATCTGCcatcat                                      >  2:100895‑M1/7‑141 (MQ=255)                                                                                                           ATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATc                                 >  1:157311‑M1/1‑141 (MQ=255)                                                                                                               GCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATGacac                             <  2:116766‑M1/141‑1 (MQ=255)                                                                                                               GCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCacac                             <  1:213918‑M1/141‑1 (MQ=255)                                                                                                                CAAACTGGGTCAGGTTTGCGCAGTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCATGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATctatcaaaca                            >  2:345894‑M1/1‑137 (MQ=255)                                                                                                                 AAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTCTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCTTCTATCATACtt                           >  1:431603‑M1/1‑141 (MQ=255)                                                                                                                  AACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCAATTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACttt                          <  2:239649‑M1/141‑1 (MQ=255)                                                                                                                    CTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTTTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTa                        >  2:255573‑M1/1‑141 (MQ=255)                                                                                                                    CTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTa                        >  2:393863‑M1/1‑141 (MQ=255)                                                                                                                      gggTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACg                      <  2:231692/141‑1 (MQ=255)                                                                                                                       ggTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCCATCACACTTTTACGa                     >  1:510069/1‑141 (MQ=255)                                                                                                                          cAGGTTTGCGCATTTAAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGGAAATATCGGCTGAACGCCATCGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGaaaa                  <  1:24600/141‑1 (MQ=255)                                                                                                                                      ttttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACCTGGccc      >  1:464136‑M2/6‑141 (MQ=255)                                                                                                                                       tttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCa     <  2:213918‑M2/137‑1 (MQ=255)                                                                                                                                         tcaaTTTCTATTATTTGTAGCGTCTCATTTTTTTCCTTCTAAATATCTTCTGCACGCCATTGTTTTGGATAGCCTAGACGCGTACAGAGATAACATCTGCCATCATCTATCACACTTATACGAAAAAGAACATGGCCCata   <  2:416094/139‑1 (MQ=255)                                                                                                                                         taAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCATa   <  2:292805‑M2/139‑1 (MQ=255)                                                                                                                                          aAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCATaa  <  1:402518‑M2/140‑1 (MQ=255)                                                                                                                                           |                                                                                                                                            AGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCATAA  >  USA300TCH1516_ALE/2561099‑2561376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.