New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1030884 =	55 (1.060)	3 (0.060)	3/234	NT	5.9%	intergenic (+7/‑129)	ktrB_1/yfkN_2	Ktr system potassium uptake protein B/Trifunctional nucleotide phosphoesterase protein YfkN
	?	USA300TCH1516_ALE	1030933 =	47 (1.010)					intergenic (+56/‑80)	ktrB_1/yfkN_2	Ktr system potassium uptake protein B/Trifunctional nucleotide phosphoesterase protein YfkN

CTTAATATCATTTATCATTATGATAGCAGGACGTCGAGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGATATGCAT  >  USA300TCH1516_ALE/1030793‑1031069                                                                                                                                              |                                                                                                                                          cTTAATATCATTTATCATTATGATAGCAGGACGTCGAGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCtt                                                                                                                                           >  2:368169/1‑141 (MQ=255)     atttcatttatcattATGATAGCAGGACGTCGAGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAACTACGCTACACCAATATGAGTCTAAGTTT‑AGTTCAACTGTATTTTAACTGGAACTTAGTTTGCtttttt                                                                                                                                       <  2:430966/138‑1 (MQ=255)       atcatttatcattATGATAGCAGGACGTCGAGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAg                                                                                                                                     >  1:92077/1‑141 (MQ=255)          atttatcattATGATAGCAGGACGTCGAGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTATATTGCTTTTTTAGttt                                                                                                                                  >  1:345747/1‑141 (MQ=255)               tcattATGATAGCAGGACGTCGAGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTAtt                                                                                                                             >  2:15152/1‑141 (MQ=255)                   tATGATAGCAGGACGTCGAGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTGGTATT‑TTTa                                                                                                                        >  2:605118/1‑141 (MQ=255)                   tATGATAGCAGGACGTCGAGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAAATTTTAACTGGAACTTAGATTGCTTTTTTAGGTTGTATT‑TTTa                                                                                                                        >  2:469045/1‑141 (MQ=255)                    aTGATAGCAGGACGTCGAGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTACATTTTAACTGGAACTTAGATTGCTGTTTTAGTTTGTATT‑TTTaa                                                                                                                       <  1:334552/141‑1 (MQ=255)                          gCAGGACGTCGAGAACCAGCTAAGTTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTTTT‑TTTAACTTAtt                                                                                                                 >  1:604647/1‑141 (MQ=255)                            aGGACGTCGAGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAAATGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTAAtttt                                                                                                               >  1:405557/1‑141 (MQ=255)                              gatgTCAAGAACCAGATGAATTCCCTTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTGTAACTGGAACTTCGTTTGCTTGTTCAGTTTGTATC‑TGTAACTTATTTtat                                                                                                             <  1:120314/138‑1 (MQ=255)                              gACGTCGAGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTtat                                                                                                             <  1:599744/141‑1 (MQ=255)                               aCGTCGAGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTtata                                                                                                            >  2:489011/1‑141 (MQ=255)                                 gTCGAGAACCAGAGAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAg                                                                                                          >  1:278860/1‑141 (MQ=255)                                    gagaACCAGATGAATTCCATTATCCAAAAGAACGGAGACAAATAGGAGAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACg                                                                                                       <  1:470519/141‑1 (MQ=255)                                    gagaACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACg                                                                                                       <  2:558262/141‑1 (MQ=255)                                        ccattttcgaaaccaatcgtcttataaaataagttaaaaatacaaactaaaaaagcaatctaagtttagttaatgtagattttaactggaacttagattgctTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGAtt                                                                                                    >  2:497200‑M2/103‑141 (MQ=255)                                          cAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGt                                                                                                 >  2:243857/1‑141 (MQ=255)                                          cAGAAAAATTCCATTATCCAAAAGAACGTATGCAAATAGGATAATATAATAGCAACCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGt                                                                                                 >  1:416820/1‑141 (MQ=255)                                          cAGAAAAATGCCCTTATCCAAAATATCTTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAAATTTTAACTGGAACCTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACTATTGGt                                                                                                 <  2:605897/141‑1 (MQ=255)                                           aGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGtt                                                                                                <  1:132390/141‑1 (MQ=255)                                             aTAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGtttg                                                                                              >  2:243388/1‑140 (MQ=255)                                                    ccATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAATTCTTTTTGTAGTTCAATTGGTTTCGaacgtg                                                                                       >  2:426527/1‑137 (MQ=255)                                                    ccATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATg                                                                                       >  1:121825/1‑141 (MQ=255)                                                    ccATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATg                                                                                       <  2:221806/141‑1 (MQ=255)                                                     aatcgtcttataaaataagttaaaaatacaaactaaaaaAGCAATCTAAGTTCCAGTTAAAATCTACATTAACTA‑AACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATgg                                                                                      >  2:497200‑M1/40‑141 (MQ=255)                                                           ccAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACt                                                                                <  1:34922/141‑1 (MQ=255)                                                           ccAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACt                                                                                <  1:61423/141‑1 (MQ=255)                                                            cAAAAGAACGTATTCAAATGAACAAATAGAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTa                                                                               >  1:297218/1‑141 (MQ=255)                                                             aaaaGAACGTATTCAAATAGGATAATATGATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAg                                                                              <  1:345428/141‑1 (MQ=255)                                                               aataaCGTACTCAAATAGGATAATATAATAGCAAGCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTAGAAGACGATTGGTTTCGAAAATGGTAAACTAGTa                                                                            <  1:302494/138‑1 (MQ=255)                                                               aaGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTa                                                                            <  1:277996/141‑1 (MQ=255)                                                                   aCGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTTGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACaa                                                                        >  1:573608/1‑141 (MQ=255)                                                                   aCGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACaa                                                                        >  1:200115/1‑141 (MQ=255)                                                                     gTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGATAAACTCGTAAccttg                                                                      >  2:333063/1‑137 (MQ=255)                                                                      tATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTGAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATga                                                                     >  1:601759/1‑141 (MQ=255)                                                                           aaaTAGGATAATATAATAGCAATCTAAGTTT‑AGTTACTCTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTACCTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGgt                                                                <  2:175939/141‑1 (MQ=255)                                                                           aaaTAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTCTT‑TTTAACTTATTTTATACGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGgt                                                                >  2:574647/1‑141 (MQ=255)                                                                            aaTAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTTTTTT‑TTTAACTTATTTTATAAGACTATTGGTTTCGAAAATGGTAAACTGGTAACAATGAGAGgtt                                                               >  2:208793/1‑140 (MQ=255)                                                                            aaTAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTACT‑TTTAACTTTTTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGgtg                                                               <  2:489444/141‑1 (MQ=255)                                                                                        taataGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTTGTTTTTTTT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGa                                                   >  2:456611/1‑141 (MQ=255)                                                                                          ataGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTCGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGaaa                                                 >  1:600302/1‑141 (MQ=255)                                                                                                  tctaagttccagttaaaatctacattaactaaacttagattgctTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAAAAATGAGAGGTGTAACATGATGGAAAAAAATGa                                          >  2:348153‑M2/45‑141 (MQ=255)                                                                                                     AGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGaaa                                        <  1:319835‑M1/139‑1 (MQ=255)                                                                                                     AGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGaaa                                        >  2:319835‑M1/1‑139 (MQ=255)                                                                                                     AGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTGTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAAc                                      <  2:459688‑M1/141‑1 (MQ=255)                                                                                                       ttt‑AGTTACTGTAGATTTTTACTTGAATCTAGCTTGATTTTTCAGTTTGCCTTATTTAACTTAATAT‑TGAGACGATTGCTTACCAACTTGTAAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACAt                                    <  2:278860/141‑1 (MQ=255)                                                                                                         t‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTa                                  <  1:220121/141‑1 (MQ=255)                                                                                                           aGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTGTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGACAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTaa                                 <  1:144354/141‑1 (MQ=255)                                                                                                             ttAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATg                               <  1:251167/141‑1 (MQ=255)                                                                                                              ttaaaatctacattaactaaacttagattgctTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGt                              >  1:529924‑M2/33‑141 (MQ=255)                                                                                                                 tGTAGCTTTTCACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACATATTTTATAAGACGATTGGTTTCGAAAAAGGTATACTAATACCTTTTCTACGTGTAACATGATGGAAAAAAATGAAAACATTAATGTaga                           <  2:336608/141‑1 (MQ=255)                                                                                                                 tGTAGATTTTAACTGGAACTTAGATTGCTTTTGTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTaga                           <  1:85258/141‑1 (MQ=255)                                                                                                                  gTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTAAT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTagaa                          >  1:86235/1‑140 (MQ=255)                                                                                                                         ttAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTaa                   >  2:162691/1‑141 (MQ=255)                                                                                                                          tAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAAc                  <  2:573608/141‑1 (MQ=255)                                                                                                                            aCTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTa                >  1:359103/1‑141 (MQ=255)                                                                                                                             ctgaaatttagattgctTTTTTAGTGTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAAATAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTAc               <  1:287852‑M2/124‑1 (MQ=255)                                                                                                                               ggAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGG‑AAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTc            >  1:540068/1‑141 (MQ=255)                                                                                                                                gAACTTAGCTCGATTTTTTAGTTTGTCTT‑TTTACACTATTTTATGAGACGATTGGTTGCAAAAATAGTAACCTAGTAACAATGCGAGGTGTAACATGATGGAACAAAATGAAAACAGTAATGTAGAGATTTTAACTACGTc            >  2:157254/1‑141 (MQ=255)                                                                                                                                  acttagattgctTTTTTAGTTTGTCTT‑TTTAAATTATTATATAAGGCGATTGGTTTCGAACATGGTAAAATAGTAACAATGAGAGGAGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTAAg          >  2:142525‑M2/13‑141 (MQ=255)                                                                                                                                    ttagattgctTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGat        <  1:234513‑M2/131‑1 (MQ=255)                                                                                                                                     tagattgctTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGata       <  1:116196‑M2/132‑1 (MQ=255)                                                                                                                                         ttgctTTTTTAGTTTGTAGT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGATATGCa   <  1:196540‑M2/136‑1 (MQ=255)                                                                                                                                          tgctTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTCGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAAAGCTTTTACATAAGTACGATATGCAt  >  2:191399‑M2/5‑141 (MQ=255)                                                                                                                                              |                                                                                                                                          CTTAATATCATTTATCATTATGATAGCAGGACGTCGAGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTT‑AGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATT‑TTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGTAACATGATGGAAAAAAATGAAAACATTAATGTAGAGATTTTAACTACGTCAGATATGCAT  >  USA300TCH1516_ALE/1030793‑1031069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.