New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	458102 =	NA (NA)	3 (0.030)	3/280	2.5	NA	coding (712/1557 nt)	hsdM_1	Type I restriction enzyme EcoKI M protein
	?	USA300TCH1516_ALE	458161 =	NA (NA)					coding (771/1557 nt)	hsdM_1	Type I restriction enzyme EcoKI M protein

AATTGGGCGCTTTGCGGCGACAGCGGGTAAAAAAGCAGGCGAGTTCTATACACCACAACAAGTATCTAAGATACTGGCGAAGATTGTCACAGACGGTAAAGATAAATTACGTCACGTGTATGACCCAACATGTGGTTCAGGTTCACTGTTGTTACGTGTTGGTAAAGAAACACAAGTGTATCGTTATTTCGGTCAAGAACGTAACAATACTACATACAACTTAGCACGCATGAATATGTTATTACATGATGTGCGTTATGAGAACTTCGATA  >  USA300TCH1516_ALE/457954‑458225                                                                                                                                                     |                                                                                                                            aaTTGGGCGCTTTGCGGCGACAGCGGGTAAAAAAGCAGGCGAGTTCTATACACCACAACAAGTATCTAAGATACTGGCGAAGATTGTCACAGACGGTAAAGATAAATTACGTCACGTGTATGACCCAACATGTGGTTCAGGTTCACtgttg                                                                                                                           <  2:461018/151‑1 (MQ=32) aaTTGGGCGCTTTGCGGCGACAGCGGGTAAAAAAGCAGGCGAGTTCTATACACCACAACAAGTATCTAAGATACTGGCGAAGATTGTCACAGACGGTAAAGATAAATTACGTCACGTGTATGACCCAACATGTGGTTCAGGTTCACtgttg                                                                                                                           >  3:315464/1‑151 (MQ=31) aaTTGGGCGCTTTGCGGCGACAGCGGGTAAAAAAGCAGGCGAGTTCTATACACCACAACAAGTATCTAAGATACTGGCGAAGATTGTCACAGACGGTAAAGATAAATTACGTCACGTGTATGACCCAACATGTGGTTCAGGTTCACtgttg                                                                                                                           <  4:174500/151‑1 (MQ=32)  aTTGGGCGCTTTGCGGCGACAGCGGGTAAAAAAGCAGGCGAGTTCTATACACCACAACAAGTATCTAAGATACTGGCGAAGATTGTCACAGACGGTAAAGATAAATTACGTCACGTGTATGACCCAACATGTGGTTCAGGTTCACtgttgt                                                                                                                          >  1:544282/1‑151 (MQ=31)  aTTGGGCGCTTTGCGGCGACAGCGGGTAAAAAAGCAGGCGAGTTCTATACACCACAACAAGTATCTAAGATACTGGCGAAGAAGGTCACAGACGTGAAATAGAAATTACGTCACGTGTATGACCCAACATGTGGTTCAGGTTCACtgttgt                                                                                                                          >  1:1058760/1‑151 (MQ=11)    tGGGCGCTTTGCGGCGACAGCGGGTAAAAAAGCAGGCGAGTTCTATACACCACAACAAGTATCTAAGATACTGGCGAAGATTGTCACAGACGGTAAAGATAAATTACGTCACGTGTATGACCCAACATGTGGTTCAGGTTCACTGTTGTTa                                                                                                                        <  1:10697/151‑1 (MQ=11)    tGGGCGCTTTGCGGCGACAGCGGGTAAAAAAGCAGGCGAGTTCTATACACCACAACAAGTATCTAAGATACTGGCGAAGATTGTCACAGACGGTAAAGATAAATTACGTCACGTGTATGACCCAACATGTGGTTCAGGTTCACTGTTGTTa                                                                                                                        <  2:978150/151‑1 (MQ=11)                                                                                                                          gaaccAACAAGTGGTTCAGGTTCAATGTTGTTACGTGTTGGTAAAGAAACACTAGTGTATAGTTATTTCGGTTAAGAATGTAACAATAATACATACAACTTAGCACGCATGAACATGTTATTACATGATGTGCGGTATGGGAAATTAGata  <  4:360208/148‑1 (MQ=1)                                                                                                                                                     |                                                                                                                            AATTGGGCGCTTTGCGGCGACAGCGGGTAAAAAAGCAGGCGAGTTCTATACACCACAACAAGTATCTAAGATACTGGCGAAGATTGTCACAGACGGTAAAGATAAATTACGTCACGTGTATGACCCAACATGTGGTTCAGGTTCACTGTTGTTACGTGTTGGTAAAGAAACACAAGTGTATCGTTATTTCGGTCAAGAACGTAACAATACTACATACAACTTAGCACGCATGAATATGTTATTACATGATGTGCGTTATGAGAACTTCGATA  >  USA300TCH1516_ALE/457954‑458225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.